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ASM42209v1

Organism name:
Mannheimia haemolytica D174 (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: D174
BioSample:
SAMN02056364
BioProject:
PRJNA194567
Submitter:
National Animal Disease Center
Date:
2013/07/11
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000422095.1 (latest)
RefSeq assembly accession:
GCF_000422095.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
OpGen optical mapping
Reference guided assembly:
CP005972.1
Genome coverage:
25x; 1602x; 21x
Sequencing technology:
454; Illumina; PacBio

IDs: 40801 [UID] 731538 [GenBank] 751518 [RefSeq]

See Genome Information for Mannheimia haemolytica

There are 2287 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/03/2024 03:31:21
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,823
CDSs (total)::2,734
Genes (coding)::2,640
CDSs (with protein)::2,640
Genes (RNA)::89
rRNAs::7, 6, 6 (5S, 16S, 23S)
complete rRNAs::7, 6, 6 (5S, 16S, 23S)
tRNAs::66
ncRNAs::4
Pseudo Genes (total)::94
CDSs (without protein)::94
Pseudo Genes (ambiguous residues)::0 of 94
Pseudo Genes (frameshifted)::54 of 94
Pseudo Genes (incomplete)::32 of 94
Pseudo Genes (internal stop)::11 of 94
Pseudo Genes (multiple problems)::3 of 94
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,702,201
Total ungapped length2,702,201
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000422115.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP006574.1=NC_021739.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,702,201

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Mannheimia haemolytica D174Mannheimia haemolytica

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900452985.1Mannheimia haemolyticatype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900452985.1Mannheimia haemolyticatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.7288.2184.13
Best-match type98.7288.2184.13

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna