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ASM42727v1

Organism name:
Mannheimia haemolytica D171 (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: D171
BioSample:
SAMN02056363
BioProject:
PRJNA194566
Submitter:
National Animal Disease Center
Date:
2013/07/11
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000427275.1 (latest)
RefSeq assembly accession:
GCF_000427275.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
OpGen optical mapping
Reference guided assembly:
CP005972.1
Genome coverage:
27x; 1633x; 23x
Sequencing technology:
454; Illumina; PacBio

IDs: 41051 [UID] 734528 [GenBank] 751498 [RefSeq]

See Genome Information for Mannheimia haemolytica

There are 2328 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/03/2024 03:33:10
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,489
CDSs (total)::2,405
Genes (coding)::2,293
CDSs (with protein)::2,293
Genes (RNA)::84
rRNAs::8, 6, 6 (5S, 16S, 23S)
complete rRNAs::8, 6, 6 (5S, 16S, 23S)
tRNAs::60
ncRNAs::4
Pseudo Genes (total)::112
CDSs (without protein)::112
Pseudo Genes (ambiguous residues)::0 of 112
Pseudo Genes (frameshifted)::81 of 112
Pseudo Genes (incomplete)::26 of 112
Pseudo Genes (internal stop)::16 of 112
Pseudo Genes (multiple problems)::10 of 112
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,501,382
Total ungapped length2,501,382
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000427285.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP006573.1=NC_021738.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,501,382

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Mannheimia haemolytica D171Mannheimia haemolytica

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900452985.1Mannheimia haemolyticatype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900452985.1Mannheimia haemolyticatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9199.5287.86
Best-match type99.9199.5287.86

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna