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Source database (GenBank or RefSeq) File type

EG5

Organism name:

Elaeis guineensis (African oil palm)

BioSample:

SAMN02981535

BioProject:

PRJNA192219

Submitter:

Orion Genomics

Date:

2013/08/13

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_000442705.1 (latest)

RefSeq assembly accession:

GCF_000442705.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome Pltd

Data displayed for RefSeq version

WGS Project:

ASJS01

Assembly method:

Newbler v. 2.6

Genome coverage:

16.0x

Sequencing technology:

454

IDs: 49321 [UID] 756308 [GenBank] 1463378 [RefSeq]

See Genome Information for Elaeis guineensis

Pathogen Detection Resources

There are 4 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000442705.1	≠	GCF_000442705.1	EG5	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	1,535,178,229
Total ungapped length	1,057,107,237
Gaps between scaffolds	288
Number of scaffolds	40,349
Scaffold N50	1,045,414
Scaffold L50	282
Number of contigs	202,468
Contig N50	9,367
Contig L50	28,360
Total number of chromosomes and plasmids	17
Number of component sequences (WGS or clone)	202,468

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM002081.1	=	NC_025993.1	0
Chromosome 2	CM002082.1	=	NC_025994.1	0
Chromosome 3	CM002083.1	=	NC_025995.1	0
Chromosome 4	CM002084.1	=	NC_025996.1	0
Chromosome 5	CM002085.1	=	NC_025997.1	0
Chromosome 6	CM002086.1	=	NC_025998.1	0
Chromosome 7	CM002087.1	=	NC_025999.1	0
Chromosome 8	CM002088.1	=	NC_026000.1	0
Chromosome 9	CM002089.1	=	NC_026001.1	0
Chromosome 10	CM002090.1	=	NC_026002.1	0
Chromosome 11	CM002091.1	=	NC_026003.1	0
Chromosome 12	CM002092.1	=	NC_026004.1	0
Chromosome 13	CM002093.1	=	NC_026005.1	0
Chromosome 14	CM002094.1	=	NC_026006.1	0
Chromosome 15	CM002095.1	=	NC_026007.1	0
Chromosome 16	CM002096.1	=	NC_026008.1	0
unplaced	n/a	n/a	n/a	40,044

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	1,535,021,256	40,348	1,056,950,264	1,045,414	162,119	288
Chromosome 1	68,435,666	28	53,746,598	3,733,204	6,190	27
Chromosome 2	65,558,141	21	52,228,836	4,363,897	5,967	20
Chromosome 3	60,060,032	21	46,146,069	3,685,273	5,507	20
Chromosome 4	57,251,647	37	42,998,394	2,459,657	5,584	36
Chromosome 5	51,955,539	18	40,357,349	4,012,069	4,743	17
Chromosome 6	44,357,769	31	32,032,900	2,172,250	4,225	30
Chromosome 7	43,454,766	16	33,115,468	4,101,763	4,125	15
Chromosome 8	40,195,399	27	30,697,753	3,136,173	3,758	26
Chromosome 9	38,056,896	22	27,277,511	2,684,215	3,779	21
Chromosome 10	31,890,735	12	25,768,232	6,247,886	2,839	11
Chromosome 11	30,068,910	14	22,174,469	3,679,125	2,855	13
Chromosome 12	28,800,575	14	23,340,315	3,451,122	2,617	13
Chromosome 13	27,817,470	14	21,651,776	2,232,408	2,536	13
Chromosome 14	24,379,743	13	19,269,703	4,634,392	2,198	12
Chromosome 15	24,314,465	10	18,979,886	4,422,350	2,305	9
Chromosome 16	21,371,083	6	17,445,729	5,464,053	1,925	5
unplaced	877,052,420	40,044	549,719,276	265,498	100,966	0

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EG5

See Genome Information for Elaeis guineensis

Pathogen Detection Resources

There are 4 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Information

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Assembly Unit Name
Primary Assembly
non-nuclear