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ASM44468v1

Organism name:
Glaesserella parasuis 174 (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 174
BioSample:
SAMN02470073
BioProject:
PRJNA184685
Submitter:
Iowa State University
Date:
2013/08/07
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Excluded from RefSeq:
  • genome length too small
GenBank assembly accession:
GCA_000444685.1 (latest)
RefSeq assembly accession:
GCF_000444685.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
APCA01
Assembly method:
NextGENe v. 2.00
Genome coverage:
1052x
Sequencing technology:
Illumina GAIIx

IDs: 47831 [UID] 753038 [GenBank] 786178 [RefSeq]

See Genome Information for Glaesserella parasuis

There are 805 assemblies for this organism

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History (Show revision history)

Comment

This Haemophilus parasuis 174 whole genome shotgun (WGS) sequencing project was assembled from Illumina GAIIx data using NextGENe version 2.0 with an estimated 1052x coverage. Annotation was performed by the Institute for Genome Sciences (IGS) Annotation Engine (http:// ae.igs.umaryland.edu/cgi/ae_pipeline_outline.cgi). ... Please be aware that little to no manual curation of this assembly and annotation has been performed. Source DNA is available from Dr. Karen Register, USDA/ARS/NADC.  more

Global statistics

Total sequence length1,369,811
Total ungapped length1,369,811
Number of contigs63
Contig N5048,645
Contig L507
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)63

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,369,811631,369,81148,64500

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Glaesserella parasuis 174Glaesserella parasuis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900450925.1Glaesserella parasuistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900450925.1Glaesserella parasuistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.6992.8051.70
Best-match type98.6992.8051.70

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna