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Esch_coli_UMEA_3489-1_V1

Organism name:
Escherichia coli UMEA 3489-1 (E. coli)
Taxonomy check:
OK
Infraspecific name:
Strain: UMEA 3489-1
BioSample:
SAMN01885962
BioProject:
PRJNA186353
Submitter:
Broad Institute
Date:
2013/12/13
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000507685.1 (latest)
RefSeq assembly accession:
GCF_000507685.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AZJO01
Assembly method:
allpaths v. R47687
Genome coverage:
135.0x
Sequencing technology:
Illumina

IDs: 86631 [UID] 877508 [GenBank] 878808 [RefSeq]

See Genome Information for Escherichia coli

There are 256087 assemblies for this organism

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History (Show revision history)

Comment

Please be aware that the annotation is done automatically with little or no manual curation.

Global statistics

Total sequence length4,935,792
Total ungapped length4,909,757
Gaps between scaffolds0
Number of scaffolds7
Scaffold N504,041,734
Scaffold L501
Number of contigs22
Contig N50467,153
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)22

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,935,79274,909,7574,041,734150

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Escherichia coli UMEA 3489-1Escherichia coli

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000013265.1Escherichia coli UTI89claderef

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000013265.1Escherichia colicladeref

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.9090.9586.21
Best-match type98.9090.9586.21

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna