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Source database (GenBank or RefSeq) File type

S_indicum_v1.0

Organism name:

Sesamum indicum (sesame)

Infraspecific name:

Cultivar: Zhongzhi No. 13

BioSample:

SAMN02981519

BioProject:

PRJNA186669

Submitter:

Oil Crops Research Institute of the Chinese Academy of Agricultural Sciences

Date:

2014/01/06

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_000512975.1 (latest)

RefSeq assembly accession:

GCF_000512975.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome Pltd

Data displayed for RefSeq version

WGS Project:

APMJ01

Assembly method:

SOAPdenovo v. 1.06

Genome coverage:

152.7x

Sequencing technology:

Illumina Hiseq 2000

IDs: 89401 [UID] 886318 [GenBank] 1475368 [RefSeq]

See Genome Information for Sesamum indicum

Pathogen Detection Resources

There are 6 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000512975.1	≠	GCF_000512975.1	S_indicum_v1.0	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	275,059,498
Total ungapped length	270,486,670
Gaps between scaffolds	133
Number of scaffolds	16,369
Scaffold N50	2,060,396
Scaffold L50	44
Number of contigs	26,176
Contig N50	52,214
Contig L50	1,544
Total number of chromosomes and plasmids	17
Number of component sequences (WGS or clone)	26,176

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Linkage Group LG1	CM002349.1	=	NC_026145.1	0
Linkage Group LG2	CM002357.1	=	NC_026146.1	0
Linkage Group LG3	CM002358.1	=	NC_026147.1	0
Linkage Group LG4	CM002359.1	=	NC_026148.1	0
Linkage Group LG5	CM002360.1	=	NC_026149.1	0
Linkage Group LG6	CM002361.1	=	NC_026150.1	0
Linkage Group LG7	CM002362.1	=	NC_026151.1	0
Linkage Group LG8	CM002363.1	=	NC_026152.1	0
Linkage Group LG9	CM002364.1	=	NC_026153.1	0
Linkage Group LG10	CM002350.1	=	NC_026154.1	0
Linkage Group LG11	CM002351.1	=	NC_026155.1	0
Linkage Group LG12	CM002352.1	=	NC_026156.1	0
Linkage Group LG13	CM002353.1	=	NC_026157.1	0
Linkage Group LG14	CM002354.1	=	NC_026158.1	0
Linkage Group LG15	CM002355.1	=	NC_026159.1	0
Linkage Group LG16	CM002356.1	=	NC_026160.1	0
unplaced	n/a	n/a	n/a	16,219

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	274,906,174	16,368	270,333,346	2,060,396	9,807	133
Linkage Group LG1	18,577,331	10	18,353,930	2,264,967	563	9
Linkage Group LG2	18,500,646	8	18,309,402	2,892,591	560	7
Linkage Group LG3	24,928,530	14	24,585,757	2,494,850	799	13
Linkage Group LG4	17,356,267	17	16,974,646	1,465,479	579	16
Linkage Group LG5	18,898,134	13	18,612,615	1,995,476	573	12
Linkage Group LG6	25,289,714	13	25,012,497	2,899,183	768	12
Linkage Group LG7	11,725,536	14	11,519,752	1,304,361	425	13
Linkage Group LG8	21,523,998	9	21,308,197	4,001,393	638	8
Linkage Group LG9	12,411,895	6	12,246,513	2,384,795	390	5
Linkage Group LG10	17,245,970	10	17,055,383	2,726,465	466	9
Linkage Group LG11	15,446,199	9	15,265,745	1,849,807	467	8
Linkage Group LG12	6,373,461	6	6,278,374	1,231,784	222	5
Linkage Group LG13	5,050,363	7	4,947,375	764,389	169	6
Linkage Group LG14	4,882,680	4	4,824,773	3,104,491	153	3
Linkage Group LG15	10,047,770	5	9,943,470	6,297,173	340	4
Linkage Group LG16	4,963,887	4	4,883,938	2,564,883	125	3
unplaced	41,683,793	16,219	40,210,979	156,486	2,570	0

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S_indicum_v1.0

See Genome Information for Sesamum indicum

Pathogen Detection Resources

There are 6 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Unit Name
Primary Assembly
non-nuclear