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ASM52168v1

Organism name:
Mannheimia varigena USDA-ARS-USMARC-1388 (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: USDA-ARS-USMARC-1388
BioSample:
SAMN03081508
BioProject:
PRJNA230708
Submitter:
USDA-ARS-USMARC
Date:
2014/01/22
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000521685.1 (latest)
RefSeq assembly accession:
GCF_000521685.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Celera v. 7.0
Genome coverage:
'complete : 24X coverage : reads >= 8000'
Sequencing technology:
PacBio C2 P4 Long Read

IDs: 93661 [UID] 895168 [GenBank] 1497238 [RefSeq]

See Genome Information for Mannheimia varigena

There are 8 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria available from MARC

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/10/2024 00:55:45
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,129
CDSs (total)::2,044
Genes (coding)::2,022
CDSs (with protein)::2,022
Genes (RNA)::85
rRNAs::8, 6, 6 (5S, 16S, 23S)
complete rRNAs::8, 6, 6 (5S, 16S, 23S)
tRNAs::61
ncRNAs::4
Pseudo Genes (total)::22
CDSs (without protein)::22
Pseudo Genes (ambiguous residues)::0 of 22
Pseudo Genes (frameshifted)::5 of 22
Pseudo Genes (incomplete)::16 of 22
Pseudo Genes (internal stop)::6 of 22
Pseudo Genes (multiple problems)::5 of 22
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,228,291
Total ungapped length2,228,291
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000521705.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP006953.1=NZ_CP006953.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,228,291

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Mannheimia varigena USDA-ARS-USMARC-1388Mannheimia varigena

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_013377235.1Mannheimia varigenatype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_013377235.1Mannheimia varigenatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.1392.0895.89
Best-match type97.1392.0895.89

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna