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ASM52176v1

Organism name:
Bibersteinia trehalosi USDA-ARS-USMARC-190 (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: USDA-ARS-USMARC-190
BioSample:
SAMN03081511
BioProject:
PRJNA182313
Submitter:
USDA-ARS-USMARC
Date:
2014/01/22
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000521765.1 (latest)
RefSeq assembly accession:
GCF_000521765.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Celera v. 7.0
Genome coverage:
'complete : 38X coverage : error corrected reads >= 6000 bp'
Sequencing technology:
PacBio C2 P4 Long Read

IDs: 93701 [UID] 895238 [GenBank] 1496018 [RefSeq]

See Genome Information for Bibersteinia trehalosi

There are 8 assemblies for this organism

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History (Show revision history)

Comment

Bacteria available from MARC
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/10/2024 01:02:02
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,285
CDSs (total)::2,204
Genes (coding)::2,158
CDSs (with protein)::2,158
Genes (RNA)::81
rRNAs::7, 6, 6 (5S, 16S, 23S)
complete rRNAs::7, 6, 6 (5S, 16S, 23S)
tRNAs::58
ncRNAs::4
Pseudo Genes (total)::46
CDSs (without protein)::46
Pseudo Genes (ambiguous residues)::0 of 46
Pseudo Genes (frameshifted)::19 of 46
Pseudo Genes (incomplete)::24 of 46
Pseudo Genes (internal stop)::8 of 46
Pseudo Genes (multiple problems)::4 of 46
CRISPR Arrays::4
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,443,169
Total ungapped length2,443,169
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000521775.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP006956.1=NZ_CP006956.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,443,169

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bibersteinia trehalosi USDA-ARS-USMARC-190Bibersteinia trehalosi

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_004346205.1Bibersteinia trehalositype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_004346205.1Bibersteinia trehalositype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.9687.2793.30
Best-match type97.9687.2793.30

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna