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Serr_marc_BIDMC_44_V1

Organism name:
Serratia marcescens BIDMC 44 (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: BIDMC 44
BioSample:
SAMN02356583
BioProject:
PRJNA219251
Submitter:
Broad Institute
Date:
2014/01/23
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000521925.1 (latest)
RefSeq assembly accession:
GCF_000521925.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAPD01
Assembly method:
allpaths v. R47768
Genome coverage:
137.0x
Sequencing technology:
Illumina

IDs: 93781 [UID] 895458 [GenBank] 1389988 [RefSeq]

See Genome Information for Serratia marcescens

There are 2568 assemblies for this organism

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History (Show revision history)

Comment

Please be aware that the annotation is done automatically with little or no manual curation.

Global statistics

Total sequence length5,341,662
Total ungapped length5,320,938
Gaps between scaffolds0
Number of scaffolds2
Scaffold N505,338,621
Scaffold L501
Number of contigs14
Contig N50940,008
Contig L503
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)14

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,341,66225,320,9385,338,621120

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Serratia marcescens BIDMC 44Serratia marcescens

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_017654245.1Serratia marcescens subsp. marcescens ATCC 13880type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_017654245.1Serratia marcescenstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type95.5983.9486.89
Best-match type95.5983.9486.89

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna