U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM56552v1

Organism name:
Shigella flexneri Shi06GS43 (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: Shi06GS43
BioSample:
SAMN02437364
BioProject:
PRJNA230538
Submitter:
Chinese Center for Disease Control and Prevention (China CDC)
Date:
2014/01/29
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000565525.1 (latest)
RefSeq assembly accession:
GCF_000565525.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AZOH01
Assembly method:
Velvet v. 1.2.01
Expected final version:
no
Genome coverage:
120.0x
Sequencing technology:
Illumina GAIIx

IDs: 115281 [UID] 939118 [GenBank] 1098668 [RefSeq]

See Genome Information for Shigella flexneri

There are 14734 assemblies for this organism

See more

History (Show revision history)

Comment

Bacteria and source DNA available from China CDC, P.O. Box 5, Changping, Beijing 102206, China

Global statistics

Total sequence length4,522,009
Total ungapped length4,518,020
Gaps between scaffolds0
Number of scaffolds307
Scaffold N5030,154
Scaffold L5043
Number of contigs345
Contig N5028,561
Contig L5049
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)307

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,522,0093074,518,02030,154380

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Shigella flexneri Shi06GS43Shigella flexneri

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001078805.1Shigella flexneri 2atype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001078805.1Shigella flexneritype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9796.1992.09
Best-match type99.9796.1992.09

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna