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ASM56558v1

Organism name:
Shigella flexneri Shi06GS48 (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: Shi06GS48
BioSample:
SAMN02437367
BioProject:
PRJNA230538
Submitter:
Chinese Center for Disease Control and Prevention (China CDC)
Date:
2014/01/29
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000565585.1 (latest)
RefSeq assembly accession:
GCF_000565585.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AZOK01
Assembly method:
Velvet v. 1.2.01
Expected final version:
no
Genome coverage:
120.0x
Sequencing technology:
Illumina GAIIx

IDs: 115311 [UID] 939178 [GenBank] 1099188 [RefSeq]

See Genome Information for Shigella flexneri

There are 14734 assemblies for this organism

See more

History (Show revision history)

Comment

Bacteria and source DNA available from China CDC, P.O. Box 5, Changping, Beijing 102206, China

Global statistics

Total sequence length4,522,095
Total ungapped length4,519,823
Gaps between scaffolds0
Number of scaffolds301
Scaffold N5033,346
Scaffold L5042
Number of contigs325
Contig N5030,158
Contig L5045
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)301

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,522,0953014,519,82333,346240

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Shigella flexneri Shi06GS48Shigella flexneri

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001078805.1Shigella flexneri 2atype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001078805.1Shigella flexneritype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9796.1992.14
Best-match type99.9796.1992.14

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna