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NB68_draft

Organism name:
Sulfitobacter noctilucae (a-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: NB-68
BioSample:
SAMN02721580
BioProject:
PRJNA233440
Submitter:
Yonsei University
Date:
2014/04/08
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000622365.1 (latest)
RefSeq assembly accession:
GCF_000622365.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JASC01
Assembly method:
CLC Genomics Workbench v. 5.1
Expected final version:
no
Genome coverage:
600.0x
Sequencing technology:
Illumina HiSeq

IDs: 142201 [UID] 994698 [GenBank] 1084048 [RefSeq]

See Genome Information for Sulfitobacter noctilucae

History (Show revision history)

Comment

Source DNA available from: Jihyun F. Kim, Department of Systems Biology, Yonsei University, 50 Yonsei-ro, Seodaemun-gu, Seoul 120-749, Republic of Korea
Bacteria available from: KCTC 32122 or JCM 18833
Annotation was added to the contigs in January 2015

Global statistics

Total sequence length3,914,541
Total ungapped length3,914,541
Number of contigs14
Contig N50704,360
Contig L502
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)14

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,914,541143,914,541704,36000

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Sulfitobacter noctilucaeSulfitobacter noctilucae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000622385.1Sulfitobacter noctilucicolatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type80.6120.4819.62

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected