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ASM63323v1

Organism name:
Klebsiella michiganensis H1g (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: H1g
BioSample:
SAMN02729846
BioProject:
PRJNA226202
Submitter:
University of Malaya
Date:
2014/04/18
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_000633235.1 (latest)
RefSeq assembly accession:
GCF_000633235.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AYMI01
Assembly method:
CLC Genomics Workbench v. 6
Expected final version:
no
Genome coverage:
142.0x
Sequencing technology:
Illumina MiSeq

IDs: 149111 [UID] 1008568 [GenBank] 1084688 [RefSeq]

See Genome Information for Klebsiella michiganensis

There are 1002 assemblies for this organism

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History (Show revision history)

Comment

Bacteria and source DNA available from Microbiome Lab 1, 2, & 3, Level 1 High Impact Research Building, University of Malaya, 50603 Kuala Lumpur, Malaysia.

Originally submitted as Klebsiella oxytoca but updated in June 2016 to the more recently identified ... organism Klebsiella michiganensis (PubMed ID 23053492; Saha et al. Klebsiella michiganensis sp. nov., a new bacterium isolated from a tooth brush holder. Curr. Microbiol., 2013, 66, 72-78.)  more

Global statistics

Total sequence length5,840,921
Total ungapped length5,840,921
Number of contigs68
Contig N50192,319
Contig L5010
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)68

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,840,921685,840,921192,31900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Klebsiella michiganensis H1gKlebsiella michiganensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_009173485.1Klebsiella michiganensistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_009173485.1Klebsiella michiganensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.2593.1788.39
Best-match type99.2593.1788.39

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna