Cs

Organism name:: Camelina sativa (false flax)
Infraspecific name:: Cultivar: DH55
BioSample:: SAMN02644653
BioProject:: PRJNA231618
Submitter:: Agriculture & AgriFood Canada
Date:: 2014/04/24
Assembly level:: Chromosome
Genome representation:: full
RefSeq category:: representative genome
GenBank assembly accession:: GCA_000633955.1 (latest)
RefSeq assembly accession:: GCF_000633955.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: JFZQ01
Assembly method:: SOAPdenovo v. 2.01
Genome coverage:: 100.0x
Sequencing technology:: Illumina HiSeq; 454

IDs: 156591 [UID] 1024218 [GenBank] 1387948 [RefSeq]

See Genome Information for Camelina sativa

Pathogen Detection Resources

There are 5 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000633955.1	=	GCF_000633955.1	Cs	Chromosome	Latest GenBank, Latest RefSeq

Comment

Global statistics

Total sequence length	641,356,059
Total ungapped length	596,346,045
Gaps between scaffolds	0
Number of scaffolds	37,212
Scaffold N50	30,099,736
Scaffold L50	10
Number of contigs	72,248
Contig N50	32,728
Contig L50	5,500
Total number of chromosomes and plasmids	20
Number of component sequences (WGS or clone)	37,780

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM002729.1	=	NC_025685.1	0
Chromosome 2	CM002730.1	=	NC_025686.1	0
Chromosome 3	CM002731.1	=	NC_025687.1	0
Chromosome 4	CM002732.1	=	NC_025688.1	0
Chromosome 5	CM002733.1	=	NC_025689.1	0
Chromosome 6	CM002734.1	=	NC_025690.1	0
Chromosome 7	CM002735.1	=	NC_025691.1	0
Chromosome 8	CM002736.1	=	NC_025692.1	0
Chromosome 9	CM002737.1	=	NC_025693.1	0
Chromosome 10	CM002738.1	=	NC_025694.1	0
Chromosome 11	CM002739.1	=	NC_025695.1	0
Chromosome 12	CM002740.1	=	NC_025696.1	0
Chromosome 13	CM002741.1	=	NC_025697.1	0
Chromosome 14	CM002742.1	=	NC_025698.1	0
Chromosome 15	CM002743.1	=	NC_025699.1	0
Chromosome 16	CM002744.1	=	NC_025700.1	0
Chromosome 17	CM002745.1	=	NC_025701.1	0
Chromosome 18	CM002746.1	=	NC_025702.1	0
Chromosome 19	CM002747.1	=	NC_025703.1	0
Chromosome 20	CM002748.1	=	NC_025704.1	0
unplaced	n/a	n/a	n/a	37,192

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	641,356,059	37,212	596,346,045	30,099,736	35,036
Chromosome 1	23,241,285	1	21,840,313	23,241,285	1,109
Chromosome 2	29,139,806	1	27,178,603	29,139,806	1,646
Chromosome 3	28,500,605	1	26,639,535	28,500,605	1,512
Chromosome 4	30,110,606	1	28,267,198	30,110,606	1,602
Chromosome 5	34,971,402	1	32,425,816	34,971,402	2,029
Chromosome 6	26,391,736	1	24,894,243	26,391,736	1,326
Chromosome 7	33,617,777	1	31,646,145	33,617,777	1,725
Chromosome 8	27,720,346	1	26,046,472	27,720,346	1,376
Chromosome 9	38,094,978	1	35,353,818	38,094,978	2,231
Chromosome 10	25,316,904	1	23,909,054	25,316,904	1,231
Chromosome 11	49,703,607	1	46,822,844	49,703,607	2,416
Chromosome 12	33,044,737	1	30,643,540	33,044,737	1,947
Chromosome 13	24,101,694	1	22,684,782	24,101,694	1,217
Chromosome 14	31,758,599	1	29,576,423	31,758,599	1,666
Chromosome 15	30,521,352	1	28,408,235	30,521,352	1,756
Chromosome 16	29,110,212	1	27,445,278	29,110,212	1,457
Chromosome 17	35,492,130	1	32,975,304	35,492,130	2,063
Chromosome 18	20,869,551	1	19,652,118	20,869,551	1,039
Chromosome 19	26,736,940	1	24,925,441	26,736,940	1,378
Chromosome 20	30,099,736	1	27,877,937	30,099,736	1,783
unplaced	32,812,056	37,192	27,132,946	7,515	2,527

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Cs

See Genome Information for Camelina sativa

Pathogen Detection Resources

There are 5 assemblies for this organism

History (Show revision history)

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