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ASM68718v1

Organism name:
Egretta garzetta (little egret)
Isolate:
BGI_Z169
Sex:
male
BioSample:
SAMN02596466
BioProject:
PRJNA232959
Submitter:
College of Medicine and Forensics, Xi'an Jiaotong University
Date:
2014/05/09
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000687185.1 (latest)
RefSeq assembly accession:
GCF_000687185.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JJRC01
Assembly method:
SOAPdenovo v. 1.6
Genome coverage:
74x
Sequencing technology:
Illumina HiSeq

IDs: 180611 [UID] 1085788 [GenBank] 1356868 [RefSeq]

See Genome Information for Egretta garzetta

History (Show revision history)

Comment

Annotation was added to this genome in September, 2014.

Global statistics

Total sequence length1,206,501,934
Total ungapped length1,157,806,531
Gaps between scaffolds0
Number of scaffolds11,791
Scaffold N503,067,157
Scaffold L50113
Number of contigs100,662
Contig N5029,019
Contig L5011,667
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)100,662

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,206,484,57311,7901,157,789,1703,067,15788,8710
MoleculeTotal
Length
Mitochondrion MT17,361