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Kleb_pneu_CHS_35_V1

Organism name:
Klebsiella pneumoniae CHS 35 (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: CHS 35
BioSample:
SAMN02581337
BioProject:
PRJNA234204
Submitter:
Broad Institute
Date:
2014/05/20
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000693675.1 (latest)
RefSeq assembly accession:
GCF_000693675.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JMXJ01
Assembly method:
allpaths v. R48559
Genome coverage:
142.0x
Sequencing technology:
Illumina

IDs: 181281 [UID] 1086888 [GenBank] 1343558 [RefSeq]

See Genome Information for Klebsiella pneumoniae

There are 63128 assemblies for this organism

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History (Show revision history)

Comment

Please be aware that the annotation is done automatically with little or no manual curation.

Global statistics

Total sequence length5,905,764
Total ungapped length5,861,543
Gaps between scaffolds0
Number of scaffolds13
Scaffold N502,993,068
Scaffold L501
Number of contigs28
Contig N50946,840
Contig L503
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)28

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,905,764135,861,5432,993,068150

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Klebsiella pneumoniae CHS 35Klebsiella pneumoniae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000788015.1Klebsiella pneumoniae subsp. pneumoniaetype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000788015.1Klebsiella pneumoniaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9795.0697.32
Best-match type99.9795.0697.32

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna