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Focc_2.1

Organism name:
Frankliniella occidentalis (western flower thrips)
Isolate:
FOCC.00
BioSample:
SAMN02303501
BioProject:
PRJNA203209
Submitter:
The i5k Initiative
Date:
2017/12/15
Release type:
minor
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000697945.3 (replaced)
RefSeq assembly accession:
GCF_000697945.2 (replaced)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JMDY02
Assembly method:
AllPaths LG v. 44620; Atlas Link v. 1.0; Atlas GapFill v. 2.2; redundans v. 0.12c
Expected final version:
no
Genome coverage:
158.7x
Sequencing technology:
Illumina

IDs: 1905171 [UID] 7194718 [GenBank] 7415458 [RefSeq]

See Genome Information for Frankliniella occidentalis

There are 2 assemblies for this organism

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History (Show revision history)

Comment

In August 2018 608 contigs and 15 scaffolds were found to be contaminants. The scaffolds and 577 of the contigs were suppressed at that time, and in April 2019 the last 31 contigs were finally suppressed. The assembly name ... was updated to Focc_2.1 in 2018  more

Global statistics

Total sequence length274,989,634
Total ungapped length260,445,983
Gaps between scaffolds0
Number of scaffolds18,479
Scaffold N50438,040
Scaffold L50162
Number of contigs34,226
Contig N5024,913
Contig L502,907
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)34,226

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced274,974,74518,478260,431,094438,04015,7470
MoleculeTotal
Length
Mitochondrion MT14,889