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Ntab-TN90

Organism name:
Nicotiana tabacum (common tobacco)
Infraspecific name:
Cultivar: TN90
BioSample:
SAMN02316627
BioProject:
PRJNA208209
Submitter:
Philip Morris International R&D
Date:
2014/05/29
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000715135.1 (latest)
RefSeq assembly accession:
GCF_000715135.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosomes MT and Pltd
  • Unplaced scaffolds shorter than 1,000 bases were omitted from the RefSeq assembly.
  • Data displayed for RefSeq version
WGS Project:
AYMY01
Assembly method:
SOAPdenovo v. 1.05
Genome coverage:
49.0x
Sequencing technology:
Illumina HiSeq

IDs: 733731 [UID] 1153768 [GenBank] 3209008 [RefSeq]

See Genome Information for Nicotiana tabacum

There are 4 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length3,643,471,356
Total ungapped length3,538,018,765
Gaps between scaffolds0
Number of scaffolds168,247
Scaffold N5067,743
Scaffold L5015,427
Number of contigs292,601
Contig N5040,427
Contig L5025,293
Total number of chromosomes and plasmids2
Number of component sequences (WGS or clone)292,601

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,642,884,816168,2453,537,432,22567,736124,3540
MoleculeTotal
Length
All586,540
Mitochondrion MT430,597
Plastid Pltd155,943