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Source database (GenBank or RefSeq) File type

ASM73873v5

This assembly has been replaced. See current version

Organism name:

Corvus cornix cornix (hooded crow)

Isolate:

S_Up_H32

Sex:

male

BioSample:

SAMN02143031

BioProject:

PRJNA192205

Submitter:

Uppsala University

Date:

2021/02/04

Assembly level:

Chromosome

Genome representation:

full

GenBank assembly accession:

GCA_000738735.5 (replaced)

RefSeq assembly accession:

GCF_000738735.5 (replaced)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JPSR04

Assembly method:

FALCON-Unzip v. 0.4.0

Expected final version:

Genome coverage:

150.0x

Sequencing technology:

PacBio; Hi-C

IDs: 9220811 [UID] 24837398 [GenBank] 24958808 [RefSeq]

See Genome Information for Corvus cornix

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000738735.6	=	GCF_000738735.6	ASM73873v6	Chromosome	Latest GenBank, Latest RefSeq
GCA_000738735.5	≠	GCF_000738735.5	ASM73873v5	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000738735.4	n/a	n/a	ASM73873v4	Chromosome	Replaced GenBank
GCA_000738735.3	n/a	n/a	ASM73873v3	Chromosome	Replaced GenBank
GCA_000738735.2	≠	GCF_000738735.2	ASM73873v2	Scaffold	Replaced GenBank, Replaced RefSeq
GCA_000738735.1	=	GCF_000738735.1	Hooded_Crow_genome	Scaffold	Replaced GenBank, Replaced RefSeq

Comment

Global statistics

Total sequence length	1,030,881,721
Total ungapped length	1,027,624,828
Gaps between scaffolds	0
Number of scaffolds	47
Scaffold N50	73,732,264
Scaffold L50	5
Number of contigs	472
Contig N50	8,553,235
Contig L50	33
Total number of chromosomes and plasmids	30
Number of component sequences (WGS or clone)	47

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM022185.2	=	NC_046332.1	0
Chromosome 2	CM022186.2	=	NC_046333.1	0
Chromosome 3	CM022407.2	=	NC_047056.1	0
Chromosome 4	CM022187.2	=	NC_046334.1	0
Chromosome 5	CM022188.2	=	NC_046335.1	0
Chromosome 6	CM022189.2	=	NC_046336.1	0
Chromosome 7	CM022190.2	=	NC_046337.1	0
Chromosome 8	CM022191.2	=	NC_046338.1	0
Chromosome 9	CM022192.2	=	NC_046339.1	0
Chromosome 10	CM022193.2	=	NC_046340.1	0
Chromosome 11	CM022194.2	=	NC_046341.1	0
Chromosome 12	CM022195.2	=	NC_046342.1	0
Chromosome 13	CM022196.2	=	NC_046343.1	0
Chromosome 14	CM022197.2	=	NC_046344.1	0
Chromosome 15	CM022198.2	=	NC_046345.1	0
Chromosome 1A	CM022408.2	=	NC_047057.1	0
Chromosome 17	CM022199.2	=	NC_046346.1	0
Chromosome 18	CM022200.2	=	NC_046347.1	0
Chromosome 19	CM022201.2	=	NC_046348.1	0
Chromosome 20	CM022202.2	=	NC_046349.1	0
Chromosome 21	CM022203.2	=	NC_046350.1	0
Chromosome 22	CM022204.2	=	NC_046351.1	0
Chromosome 23	CM022205.2	=	NC_046352.1	0
Chromosome 24	CM022206.2	=	NC_046353.1	0
Chromosome 4A	CM022409.2	=	NC_047058.1	0
Chromosome 26	CM022207.2	=	NC_046354.1	0
Chromosome 27	CM022208.2	=	NC_046355.1	0
Chromosome 28	CM022209.2	=	NC_046356.1	0
Chromosome Z	CM022210.2	=	NC_046357.1	0
unplaced	n/a	n/a	n/a	17

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	1,030,864,775	46	1,027,607,882	73,732,264	425
Chromosome 1	117,954,051	1	117,771,255	117,954,051	31
Chromosome 2	154,331,614	1	153,758,545	154,331,614	59
Chromosome 3	114,561,924	1	114,178,908	114,561,924	94
Chromosome 4	72,976,050	1	72,936,851	72,976,050	15
Chromosome 5	59,626,954	1	59,339,115	59,626,954	12
Chromosome 6	36,514,087	1	36,425,885	36,514,087	8
Chromosome 7	39,246,143	1	39,245,264	39,246,143	7
Chromosome 8	31,775,369	1	31,738,889	31,775,369	4
Chromosome 9	25,648,982	1	25,546,379	25,648,982	5
Chromosome 10	20,525,061	1	20,511,050	20,525,061	6
Chromosome 11	20,924,582	1	20,923,773	20,924,582	5
Chromosome 12	21,037,236	1	21,013,390	21,037,236	4
Chromosome 13	19,315,571	1	19,062,539	19,315,571	44
Chromosome 14	16,611,975	1	16,611,813	16,611,975	2
Chromosome 15	14,276,578	1	14,266,433	14,276,578	4
Chromosome 1A	73,732,264	1	73,598,976	73,732,264	20
Chromosome 17	10,972,141	1	10,972,111	10,972,141	3
Chromosome 18	12,580,095	1	12,159,803	12,580,095	6
Chromosome 19	11,197,607	1	11,171,589	11,197,607	1
Chromosome 20	15,059,066	1	15,033,237	15,059,066	3
Chromosome 21	6,847,934	1	6,847,364	6,847,934	4
Chromosome 22	4,876,366	1	4,875,068	4,876,366	5
Chromosome 23	7,530,976	1	7,398,634	7,530,976	16
Chromosome 24	6,833,524	1	6,833,414	6,833,524	2
Chromosome 4A	20,451,253	1	20,449,633	20,451,253	10
Chromosome 26	6,657,878	1	6,657,768	6,657,878	2
Chromosome 27	4,857,840	1	4,733,731	4,857,840	5
Chromosome 28	5,284,033	1	5,283,833	5,284,033	2
Chromosome Z	75,921,448	1	75,526,689	75,921,448	42
unplaced	2,736,173	17	2,735,943	217,425	4

Assembly

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ASM73873v5

See Genome Information for Corvus cornix

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Unit Name
Primary Assembly
non-nuclear