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Source database (GenBank or RefSeq) File type

Vradiata_ver6

Organism name:

Vigna radiata var. radiata (mung bean)

Infraspecific name:

Cultivar: VC1973A

BioSample:

SAMN02720863

BioProject:

PRJNA243847

Submitter:

Seoul National University

Date:

2015/10/28

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_000741045.2 (latest)

RefSeq assembly accession:

GCF_000741045.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosomes MT and Pltd

Data displayed for RefSeq version

WGS Project:

JJMO01

Assembly method:

Allpath-LG v. 42179

Expected final version:

Genome coverage:

300.0x

Sequencing technology:

Illumina HiSeq

IDs: 571941 [UID] 2560948 [GenBank] 2586958 [RefSeq]

See Genome Information for Vigna radiata

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000741045.2	≠	GCF_000741045.1	Vradiata_ver6	Chromosome	Latest GenBank, Latest RefSeq
GCA_000741045.1	n/a	n/a	Vradiata_ver6	Scaffold	Replaced GenBank

Comment

Global statistics

Total sequence length	463,637,892
Total ungapped length	430,167,408
Gaps between scaffolds	0
Number of scaffolds	2,499
Scaffold N50	25,360,630
Scaffold L50	6
Number of contigs	23,501
Contig N50	48,880
Contig L50	2,289
Total number of chromosomes and plasmids	13
Number of component sequences (WGS or clone)	2,499

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM003504.1	=	NC_028351.1	0
Chromosome 2	CM003505.1	=	NC_028352.1	0
Chromosome 3	CM003506.1	=	NC_028353.1	0
Chromosome 4	CM003507.1	=	NC_028354.1	0
Chromosome 5	CM003508.1	=	NC_028355.1	0
Chromosome 6	CM003509.1	=	NC_028356.1	0
Chromosome 7	CM003510.1	=	NC_028357.1	0
Chromosome 8	CM003511.1	=	NC_028358.1	0
Chromosome 9	CM003512.1	=	NC_028359.1	0
Chromosome 10	CM003513.1	=	NC_028360.1	0
Chromosome 11	CM003514.1	=	NC_028361.1	0
unplaced	n/a	n/a	n/a	2,486

Molecule name	GenBank ID		RefSeq ID
Mitochondrion MT	HM367685.1	=	NC_015121.1
Chloroplast Pltd	GQ893027.1	=	NC_013843.1

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	463,085,359	2,497	429,614,875	25,360,630	21,002
Chromosome 1	36,501,346	1	33,628,652	36,501,346	1,893
Chromosome 2	25,360,630	1	23,695,293	25,360,630	1,063
Chromosome 3	12,950,713	1	12,618,958	12,950,713	262
Chromosome 4	20,812,224	1	19,859,169	20,812,224	695
Chromosome 5	37,180,910	1	35,363,204	37,180,910	1,187
Chromosome 6	37,436,759	1	34,711,387	37,436,759	1,769
Chromosome 7	55,601,358	1	52,527,835	55,601,358	2,007
Chromosome 8	45,727,239	1	43,097,742	45,727,239	1,846
Chromosome 9	21,008,463	1	19,729,176	21,008,463	876
Chromosome 10	20,996,616	1	19,985,532	20,996,616	674
Chromosome 11	19,732,206	1	18,849,865	19,732,206	666
unplaced	129,776,895	2,486	115,548,062	626,664	8,064

Molecule	Total Length
All	552,533
Mitochondrion MT	401,262
Chloroplast Pltd	151,271

Assembly

Genome Assembly

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Vradiata_ver6

See Genome Information for Vigna radiata

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Unit Name
Primary Assembly
non-nuclear