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ASM77253v1

Organism name:
Chelonobacter oris (g-proteobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: 1662
BioSample:
SAMN03145057
BioProject:
PRJNA265026
Submitter:
University of Copenhagen
Date:
2014/11/05
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000772535.1 (latest)
RefSeq assembly accession:
GCF_000772535.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JSUM01
Assembly method:
CLC NGS Cell v. 6.5.1
Expected final version:
yes
Genome coverage:
44.0x
Sequencing technology:
Illumina MiSeq

IDs: 219991 [UID] 1369938 [GenBank] 1431498 [RefSeq]

See Genome Information for Chelonobacter oris

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation modifed by submitter. Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::11/03/2014 11:00:00
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::2.8 (rev. 450396)
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::2,442
CDS::2,284
Pseudo Genes::106
CRISPR Arrays::2
rRNAs::3 ( 5S, 16S, 23S )
tRNAs::48
ncRNA::1
Frameshifted Genes::17
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,610,727
Total ungapped length2,610,727
Number of contigs35
Contig N50185,495
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)35

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,610,727352,610,727185,49500

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Chelonobacter orisChelonobacter oris

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900454705.1Pasteurella testudinistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type81.8931.1126.81

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna