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Rs1.0

Organism name:
Raphanus sativus (radish)
Infraspecific name:
Cultivar: WK10039
BioSample:
SAMN03084390
BioProject:
PRJNA239785
Submitter:
Dr. Namshin Kim at KRIBB
Date:
2015/09/29
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000801105.2 (replaced)
RefSeq assembly accession:
GCF_000801105.1 (replaced)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosomes MT and Pltd
  • Data displayed for RefSeq version
WGS Project:
JRUI02
Assembly method:
Newbler v. 1.2.3
Expected final version:
no
Genome coverage:
267.0x
Sequencing technology:
Illumina; PacBio; Sanger; 454

IDs: 496801 [UID] 2362648 [GenBank] 3476778 [RefSeq]

See Genome Information for Raphanus sativus

There are 16 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length426,614,037
Total ungapped length372,022,976
Gaps between scaffolds0
Number of scaffolds10,676
Scaffold N5038,354,807
Scaffold L505
Number of contigs35,745
Contig N5019,900
Contig L505,028
Total number of chromosomes and plasmids2
Number of component sequences (WGS or clone)10,676

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced426,202,24310,674371,611,18238,354,80725,0690
MoleculeTotal
Length
All411,794
Mitochondrion MT258,426
Chloroplast Pltd153,368