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PRJEB7034

Organism name:
Aeromonas popoffii (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: CIP 105493
BioSample:
SAMEA2752414
BioProject:
PRJEB7034
Submitter:
UCONNMISEQ
Date:
2014/12/01
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000820025.1 (latest)
RefSeq assembly accession:
GCF_000820025.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CDBI01
Genome coverage:
67x

IDs: 243751 [UID] 1479248 [GenBank] 1519388 [RefSeq]

See Genome Information for Aeromonas popoffii

There are 5 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length4,762,473
Total ungapped length4,745,919
Gaps between scaffolds0
Number of scaffolds105
Scaffold N50113,504
Scaffold L5013
Number of contigs184
Contig N5074,094
Contig L5017
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)105

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,762,4731054,745,919113,504790

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Aeromonas popoffiiAeromonas popoffii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000819745.1Aeromonas bestiarumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type92.5278.6679.66

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected