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ASM104437v1

Organism name:
Methylophilales bacterium MBRSG12 (b-proteobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: MBRSG12
BioSample:
SAMN03377048
BioProject:
PRJNA276503
Submitter:
King Abdullah University of Science and Technology (KAUST)
Date:
2015/07/01
Assembly type:
na
Assembly level:
Chromosome
Genome representation:
full
Excluded from RefSeq:
  • genus undefined
GenBank assembly accession:
GCA_001044375.1 (latest)
RefSeq assembly accession:
GCF_001044375.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SPAdes v. 3.1.1
Expected final version:
yes
Genome coverage:
150.0x
Sequencing technology:
Illumina GAIIx

IDs: 358641 [UID] 1851098 [GenBank] 1852568 [RefSeq]

See Genome Information for Methylophilales bacterium MBRSG12

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
gDNA/bacteria are available from Ulrich Stingl (uli.stingl@kaust.edu.sa)

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::03/06/2015 08:53:23
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::2.9 (rev. 456657)
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes::1,443
CDS::1,315
Pseudo Genes::87
rRNAs::3 (5S, 16S, 23S)
tRNAs::37
ncRNA::1
Frameshifted Genes::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,352,831
Total ungapped length1,352,731
Gaps between scaffolds0
Number of scaffolds1
Scaffold N501,352,831
Scaffold L501
Number of contigs1
Contig N501,352,731
Contig L501
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)1

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_001044385.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP011003.1=NZ_CP011003.1

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Chromosome 1,352,83111,352,7311,352,83110

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Methylophilales bacterium MBRSG12Methylophilales bacterium MBRSG12

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_023283725.1Shewanella algicolatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type91.860.820.22

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena