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Source database (GenBank or RefSeq) File type

SPENNV200

Organism name:

Solanum pennellii (eudicots)

BioSample:

SAMEA3283146

BioProject:

PRJEB5809

Submitter:

RWTH Aachen

Date:

2014/07/11

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_001406875.2 (latest)

RefSeq assembly accession:

GCF_001406875.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in GenBank: chromosome Pltd

Data displayed for RefSeq version

Genome coverage:

210x

IDs: 589241 [UID] 2701758 [GenBank] 2721808 [RefSeq]

See Genome Information for Solanum pennellii

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_001406875.2	≠	GCF_001406875.1	SPENNV200	Chromosome	Latest GenBank, Latest RefSeq
GCA_001406875.1	n/a	n/a	SPENNV200	Chromosome	GenBank suppressed

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Status::Full annotation
Annotation Name::Solanum pennellii Annotation Release 101
Annotation Version::101
Annotation Pipeline::NCBI eukaryotic genome annotation pipeline
Annotation Software Version::8.1
Annotation Method::Best-placed RefSeq; Gnomon
Features Annotated::Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	926,426,464
Total ungapped length	855,363,675
Gaps between scaffolds	0
Number of scaffolds	12
Scaffold N50	77,991,103
Scaffold L50	6
Number of contigs	30,753
Contig N50	60,083
Contig L50	4,136
Total number of chromosomes and plasmids	12
Number of component sequences (WGS or clone)	12

Molecule name	GenBank sequence		RefSeq sequence
Chromosome 1	HG975440.1	=	NC_028637.1
Chromosome 2	HG975441.1	=	NC_028638.1
Chromosome 3	HG975442.1	=	NC_028639.1
Chromosome 4	HG975443.1	=	NC_028640.1
Chromosome 5	HG975444.1	=	NC_028641.1
Chromosome 6	HG975445.1	=	NC_028642.1
Chromosome 7	HG975446.1	=	NC_028643.1
Chromosome 8	HG975447.1	=	NC_028644.1
Chromosome 9	HG975448.1	=	NC_028645.1
Chromosome 10	HG975449.1	=	NC_028646.1
Chromosome 11	HG975450.1	=	NC_028647.1
Chromosome 12	HG975451.1	=	NC_028648.1

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	926,426,464	12	855,363,675	77,991,103	30,741
Chromosome 1	109,333,515	1	101,704,730	109,333,515	3,769
Chromosome 2	59,803,892	1	55,684,598	59,803,892	1,766
Chromosome 3	75,414,019	1	69,408,832	75,414,019	2,371
Chromosome 4	77,197,300	1	70,999,429	77,197,300	2,747
Chromosome 5	77,991,103	1	71,550,567	77,991,103	2,645
Chromosome 6	60,730,942	1	56,232,177	60,730,942	1,953
Chromosome 7	79,292,169	1	72,502,966	79,292,169	2,753
Chromosome 8	70,546,659	1	64,988,342	70,546,659	2,261
Chromosome 9	84,057,508	1	77,935,197	84,057,508	2,741
Chromosome 10	82,529,941	1	76,485,582	82,529,941	2,631
Chromosome 11	66,223,686	1	61,151,281	66,223,686	2,302
Chromosome 12	83,305,730	1	76,719,974	83,305,730	2,802

Assembly

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SPENNV200

See Genome Information for Solanum pennellii

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

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