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Source database (GenBank or RefSeq) File type

ASM144442v1

Organism name:: Pseudohongiella spirulinae (g-proteobacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: KCTC 32221
BioSample:: SAMN04260401
BioProject:: PRJNA301918
Submitter:: KCTC (Korean Collection for Type Cultures)
Date:: 2015/11/17
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
RefSeq category:: representative genome
Relation to type material:: assembly from type material
GenBank assembly accession:: GCA_001444425.1 (latest)
RefSeq assembly accession:: GCF_001444425.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: SMRT Analysis v. 2.3.0
Genome coverage:: 273x
Sequencing technology:: PacBio RS II with P6-C4 chemistry

IDs: 583691 [UID] 2685548 [GenBank] 2688988 [RefSeq]

See Genome Information for Pseudohongiella spirulinae

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_001444425.1	=	GCF_001444425.1	ASM144442v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::02/05/2023 20:31:51
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.4
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,096
CDSs (total)::3,047
Genes (coding)::3,020
CDSs (with protein)::3,020
Genes (RNA)::49
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 2 (5S, 16S, 23S)
tRNAs::39
ncRNAs::4
Pseudo Genes (total)::27
CDSs (without protein)::27
Pseudo Genes (ambiguous residues)::0 of 27
Pseudo Genes (frameshifted)::1 of 27
Pseudo Genes (incomplete)::24 of 27
Pseudo Genes (internal stop)::4 of 27
Pseudo Genes (multiple problems)::2 of 27
##Genome-Annotation-Data-END##

MIGS-Data

##MIGS-Data-START##investigation_type::bacteria_archaea
project_name::Genome sequencing of Pseudohongiella spirulinae
lat_lon::18N 109E
depth::Missing
alt_elev::Missing
country::China
environment::plant-associated
geo_loc_name::China
collection_date::2012-05-14
env_biome::ENVO:00009001
env_feature::ENVO:02000006
env_material::ENVO:00002149
ploidy::haploid
num_replicons::1
ref_biomaterial::PMID 23979563
source_mat_id::KCTC 32221
biotic_relationship::free living
specific_host::Arthrospira platensis
trophic_level::chemoheterotroph
rel_to_oxygen::aerobe
isol_growth_condt::PMID 23979563
sequencing_meth::PacBio RS II sequencing
assembly::SMRT Analysis v2.3.0
finishing_strategy::complete; 273X coverage; 1 contig
annot_source::prodigal v2.6.1
##MIGS-Data-END##

Global statistics

Total sequence length	3,345,119
Total ungapped length	3,345,119
Total number of chromosomes and plasmids	1

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	84.93	0.28	0.15

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ASM144442v1

See Genome Information for Pseudohongiella spirulinae

Pathogen Detection Resources

History (Show revision history)

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