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Source database (GenBank or RefSeq) File type

Nfu_20140520

Organism name:

Nothobranchius furzeri (turquoise killifish)

Infraspecific name:

Strain: GRZ

Sex:

female

BioSample:

SAMEA2698544

BioProject:

PRJEB5837

Submitter:

LEIBNIZ INSTITUTE FOR AGE RESEARCH - FRITZ LIPMANN

Date:

2015/12/11

Assembly level:

Chromosome

Genome representation:

full

Excluded from RefSeq:

superseded by newer assembly for species

GenBank assembly accession:

GCA_001465895.2 (latest)

RefSeq assembly accession:

GCF_001465895.1 (suppressed) see latest RefSeq assembly for this species

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for GenBank version

WGS Project:

CCSH01

Genome coverage:

100x

IDs: 618441 [UID] 2788098 [GenBank] 3041528 [RefSeq]

See Genome Information for Nothobranchius furzeri

Pathogen Detection Resources

There are 6 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_001465895.2	≠	GCF_001465895.1	Nfu_20140520	Chromosome	Latest GenBank, RefSeq suppressed
GCA_001465895.1	n/a	n/a	Nfu_20140520	Chromosome	GenBank suppressed

Comment

Global statistics

Total sequence length	1,242,498,532
Total ungapped length	856,810,559
Gaps between scaffolds	116
Number of scaffolds	6,012
Scaffold N50	15,858,201
Scaffold L50	25
Number of contigs	74,940
Contig N50	19,950
Contig L50	12,601
Total number of chromosomes and plasmids	19
Number of component sequences (WGS or clone)	68,910

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome sgr01	LN609383.1	=	NC_029649.1	0
Chromosome sgr02	LN609382.1	=	NC_029650.1	0
Chromosome sgr03	LN609391.1	=	NC_029651.1	0
Chromosome sgr04	LN609393.1	=	NC_029652.1	0
Chromosome sgr05	LN609377.1	=	NC_029653.1	0
Chromosome sgr06	LN609381.1	=	NC_029654.1	0
Chromosome sgr07	LN609387.1	=	NC_029655.1	0
Chromosome sgr08	LN609384.1	=	NC_029656.1	0
Chromosome sgr09	LN609379.1	=	NC_029657.1	0
Chromosome sgr10	LN609385.1	=	NC_029658.1	0
Chromosome sgr11	LN609378.1	=	NC_029659.1	0
Chromosome sgr12	LN609394.1	=	NC_029660.1	0
Chromosome sgr13	LN609389.1	=	NC_029661.1	0
Chromosome sgr14	LN609392.1	=	NC_029662.1	0
Chromosome sgr15	LN609388.1	=	NC_029663.1	0
Chromosome sgr16	LN609380.1	=	NC_029664.1	0
Chromosome sgr17	LN609395.1	=	NC_029665.1	0
Chromosome sgr18	LN609386.1	=	NC_029666.1	0
Chromosome sgr19	LN609390.1	=	NC_029667.1	0
unplaced	n/a	n/a	n/a	5,877

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	1,242,498,532	6,012	856,810,559	15,858,201	68,928	116
Chromosome sgr01	98,476,147	5	62,146,705	34,402,144	4,970	4
Chromosome sgr02	88,342,039	7	58,310,198	22,350,514	4,592	6
Chromosome sgr03	76,488,725	10	45,084,839	16,059,190	3,639	9
Chromosome sgr04	75,030,901	15	48,665,462	11,463,274	3,566	14
Chromosome sgr05	70,255,127	13	44,415,531	9,735,408	3,566	12
Chromosome sgr06	67,274,854	7	43,947,800	13,531,908	3,461	6
Chromosome sgr07	63,666,967	11	40,524,452	15,858,201	3,218	10
Chromosome sgr08	57,680,405	7	37,343,580	17,189,459	3,061	6
Chromosome sgr09	57,367,160	5	38,898,122	29,659,268	2,902	4
Chromosome sgr10	57,197,669	7	41,725,137	44,272,285	2,988	6
Chromosome sgr11	48,234,189	7	35,113,480	11,704,220	2,474	6
Chromosome sgr12	46,076,542	2	33,019,990	32,963,811	2,291	1
Chromosome sgr13	45,871,076	7	28,565,852	30,874,332	2,225	6
Chromosome sgr14	44,251,975	5	29,905,987	16,000,993	2,196	4
Chromosome sgr15	41,915,801	4	31,021,048	12,551,598	2,129	3
Chromosome sgr16	39,628,156	7	27,413,372	9,631,789	2,037	6
Chromosome sgr17	38,284,538	5	27,449,421	23,089,076	1,980	4
Chromosome sgr18	37,194,005	2	25,885,915	33,649,029	1,930	1
Chromosome sgr19	25,483,538	9	16,422,480	5,659,828	1,275	8
unplaced	163,778,718	5,877	140,951,188	81,864	14,428	0

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Nfu_20140520

See Genome Information for Nothobranchius furzeri

Pathogen Detection Resources

There are 6 assemblies for this organism

History (Show revision history)

Comment

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