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SA2200v1.0

Description:
Aggregatibacter actinomycetemcomitans strain SA2200 Version 1
Organism name:
Aggregatibacter actinomycetemcomitans serotype d str. SA2200 (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: SA2200
BioSample:
SAMN04573005
BioProject:
PRJNA230857
Submitter:
Bumgarner laboratory, Department of Microbiology, University of Washington
Date:
2016/03/23
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_001596325.1 (latest)
RefSeq assembly accession:
GCF_001596325.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AZTY01
Assembly method:
Velvet v. 1.2.09
Expected final version:
yes
Genome coverage:
12.16x
Sequencing technology:
Illumina MiSeq

IDs: 708501 [UID] 3132988 [GenBank] 3133858 [RefSeq]

See Genome Information for Aggregatibacter actinomycetemcomitans

There are 187 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria available from Casey Chen, Division of Periodontology, Diagnostic Sciences and Dental Hygiene, Ostrow School of Dentistry of USC, ... 925 W 34th Street, Los Angeles, CA 90089-0641, USA. Source DNA available from Casey Chen, Division of Periodontology, Diagnostic Sciences and Dental Hygiene, Ostrow School of Dentistry of USC, 925 W 34th Street, Los Angeles, CA 90089-0641, USA.  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Date::12/30/2013 12:43:36
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Provider::NCBI
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Annotation Software revision::2.3 (rev. 422554)
Genes::2,263
CDS::2,207
Pseudo Genes::6
CRISPR Arrays::5
rRNAs::5 (5S, 16S, 23S)
tRNAs::44
ncRNA::1
Frameshifted Genes::5
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,064,962
Total ungapped length2,064,962
Number of contigs436
Contig N508,932
Contig L5077
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)436

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,064,9624362,064,9628,93200

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Aggregatibacter actinomycetemcomitans serotype d str. SA2200Aggregatibacter actinomycetemcomitans

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000372365.1Aggregatibacter actinomycetemcomitans DSM 8324type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000372365.1Aggregatibacter actinomycetemcomitanstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.8686.2985.43
Best-match type97.8686.2985.43

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna