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ASM163539v1

Organism name:
Sulfitobacter sp. HI0129 (a-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: HI0129
BioSample:
SAMN04580807
BioProject:
PRJNA305749
Submitter:
Massachusetts Institute of Technology
Date:
2016/05/02
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_001635395.1 (latest)
RefSeq assembly accession:
GCF_001635395.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LWGH01
Assembly method:
MIRA v. 4.9.3
Genome coverage:
17x
Sequencing technology:
Illumina MiSeq

IDs: 733251 [UID] 3216058 [GenBank] 3402248 [RefSeq]

See Genome Information for Sulfitobacter sp. HI0129

History (Show revision history)

Comment

Source DNA is available from Edward F. DeLong edelong@hawaii.edu
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::04/11/2016 17:33:57
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,753
CDS (total)::4,693
Genes (coding)::3,681
CDS (coding)::3,681
Genes (RNA)::60
rRNAs::1, 5, 8 (5S, 16S, 23S)
complete rRNAs::1 (5S)
partial rRNAs::5, 8 (16S, 23S)
tRNAs::42
ncRNAs::4
Pseudo Genes (total)::1,012
Pseudo Genes (ambiguous residues)::1 of 1,012
Pseudo Genes (frameshifted)::15 of 1,012
Pseudo Genes (incomplete)::993 of 1,012
Pseudo Genes (internal stop)::9 of 1,012
Pseudo Genes (multiple problems)::6 of 1,012
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,210,493
Total ungapped length4,210,493
Number of contigs1,145
Contig N508,517
Contig L50150
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)1,145

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,210,4931,1454,210,4938,51700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Sulfitobacter sp. HI0129Sulfitobacter sp. HI0129

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001886735.1Sulfitobacter alexandriitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type83.3712.3911.12

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna