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Source database (GenBank or RefSeq) File type

TLL_Latcal_v3

Organism name:

Lates calcarifer (barramundi perch)

Isolate:

ASB-BC8

Sex:

male

BioSample:

SAMN04026617

BioProject:

PRJNA294489

Submitter:

Temasek Life Sciences Laboratory

Date:

2022/08/01

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_001640805.2 (latest)

RefSeq assembly accession:

GCF_001640805.2 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

LLXD02

Assembly method:

HGAP v. JUN-2014

Expected final version:

yes

Genome coverage:

60.0x

Sequencing technology:

Illumina HiSeq; PacBio

IDs: 13412861 [UID] 35000518 [GenBank] 36494898 [RefSeq]

See Genome Information for Lates calcarifer

Pathogen Detection Resources

There are 4 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_001640805.2	≠	GCF_001640805.2	TLL_Latcal_v3	Chromosome	Latest GenBank, Latest RefSeq
GCA_001640805.1	≠	GCF_001640805.1	ASM164080v1	Scaffold	Replaced GenBank, Replaced RefSeq

Comment

Unique Linkage Groups LG7_1, LG7_2, and LG16_LG22 are present in this assembly. These Linkage Groups were created in response to discrepancies between this assembly and the lower resolution L. calcarifer linkage map. LG7_1 and LG7_2 are the result of ... LG7 being split into two Linkage Groups, while LG16_LG22 is the combination of LG16 and LG22.  more

Global statistics

Total sequence length	673,814,222
Total ungapped length	666,274,994
Gaps between scaffolds	0
Number of scaffolds	2,997
Scaffold N50	25,538,952
Scaffold L50	13
Number of contigs	3,671
Contig N50	1,379,868
Contig L50	101
Total number of chromosomes and plasmids	25
Number of component sequences (WGS or clone)	2,997

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Linkage Group LG1	CM044652.1	=	NC_066833.1	0
Linkage Group LG2	CM044653.1	=	NC_066834.1	0
Linkage Group LG3	CM044654.1	=	NC_066835.1	0
Linkage Group LG4	CM044655.1	=	NC_066836.1	0
Linkage Group LG5	CM044656.1	=	NC_066837.1	0
Linkage Group LG6	CM044657.1	=	NC_066838.1	0
Linkage Group LG7_1	CM044658.1	=	NC_066839.1	0
Linkage Group LG8	CM044660.1	=	NC_066840.1	0
Linkage Group LG9	CM044661.1	=	NC_066841.1	0
Linkage Group LG10	CM044662.1	=	NC_066842.1	0
Linkage Group LG11	CM044663.1	=	NC_066843.1	0
Linkage Group LG12	CM044664.1	=	NC_066844.1	0
Linkage Group LG13	CM044665.1	=	NC_066845.1	0
Linkage Group LG14	CM044666.1	=	NC_066846.1	0
Linkage Group LG15	CM044667.1	=	NC_066847.1	0
Linkage Group LG16_LG22	CM044668.1	=	NC_066848.1	0
Linkage Group LG17	CM044669.1	=	NC_066849.1	0
Linkage Group LG18	CM044670.1	=	NC_066850.1	0
Linkage Group LG19	CM044671.1	=	NC_066851.1	0
Linkage Group LG20	CM044672.1	=	NC_066852.1	0
Linkage Group LG21	CM044673.1	=	NC_066853.1	0
Linkage Group LG7_2	CM044659.1	=	NC_066854.1	0
Linkage Group LG23	CM044674.1	=	NC_066855.1	0
Linkage Group LG24	CM044675.1	=	NC_066856.1	0
unplaced	n/a	n/a	n/a	2,972

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	673,797,687	2,996	666,258,459	25,538,952	674
Linkage Group LG1	25,703,306	1	25,270,922	25,703,306	48
Linkage Group LG2	30,394,535	1	30,321,521	30,394,535	17
Linkage Group LG3	23,499,962	1	23,087,657	23,499,962	33
Linkage Group LG4	25,538,952	1	25,199,378	25,538,952	19
Linkage Group LG5	28,963,731	1	28,595,292	28,963,731	35
Linkage Group LG6	27,924,252	1	27,594,111	27,924,252	32
Linkage Group LG7_1	23,258,384	1	22,926,840	23,258,384	31
Linkage Group LG8	25,919,959	1	25,652,920	25,919,959	29
Linkage Group LG9	22,990,584	1	22,658,796	22,990,584	32
Linkage Group LG10	27,937,307	1	27,498,310	27,937,307	28
Linkage Group LG11	23,293,155	1	23,010,525	23,293,155	26
Linkage Group LG12	27,842,965	1	27,327,752	27,842,965	51
Linkage Group LG13	27,244,013	1	27,200,182	27,244,013	4
Linkage Group LG14	14,073,782	1	13,571,111	14,073,782	27
Linkage Group LG15	30,776,907	1	30,370,294	30,776,907	16
Linkage Group LG16_LG22	25,848,596	1	25,309,736	25,848,596	40
Linkage Group LG17	27,673,719	1	27,248,891	27,673,719	35
Linkage Group LG18	19,193,443	1	19,015,795	19,193,443	27
Linkage Group LG19	24,524,913	1	24,096,613	24,524,913	30
Linkage Group LG20	23,753,645	1	23,713,434	23,753,645	7
Linkage Group LG21	28,676,982	1	28,488,101	28,676,982	36
Linkage Group LG7_2	13,910,880	1	13,828,387	13,910,880	11
Linkage Group LG23	18,168,282	1	17,771,535	18,168,282	35
Linkage Group LG24	19,811,778	1	19,626,701	19,811,778	25
unplaced	86,873,655	2,972	86,873,655	31,689	0

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TLL_Latcal_v3

See Genome Information for Lates calcarifer

Pathogen Detection Resources

There are 4 assemblies for this organism

History (Show revision history)

Comment

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Assembly Unit Name
Primary Assembly
non-nuclear