U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM164497v1

  • Anomalous assembly.
Organism name:
Piscirickettsiaceae bacterium NZ-RLO1 (g-proteobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: NZ-RLO1
BioSample:
SAMN04531180
BioProject:
PRJNA314275
Submitter:
Ministry for Primary Industries
Date:
2016/05/16
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Assembly anomaly:
contaminated
Excluded from RefSeq:
  • contaminated
  • genus undefined
GenBank assembly accession:
GCA_001644975.1 (latest)
RefSeq assembly accession:
GCF_001644975.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LVCQ01
Assembly method:
Newbler v. 2.7
Expected final version:
yes
Genome coverage:
30.0x
Sequencing technology:
454

IDs: 740871 [UID] 3243128 [GenBank] 3244098 [RefSeq]

See Genome Information for Piscirickettsiaceae bacterium NZ-RLO1

History (Show revision history)

Comment

The strain name was changed from NZ-RLO to NZ-RLO1 in April 2018

Global statistics

Total sequence length3,052,667
Total ungapped length3,052,667
Number of contigs463
Contig N5019,218
Contig L5049
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)463

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,052,6674633,052,66719,21800

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Piscirickettsiaceae bacterium NZ-RLO1Piscirickettsiaceae bacterium NZ-RLO1

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000300295.4Piscirickettsia salmonissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type92.7778.7368.52

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna