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Source database (GenBank or RefSeq) File type

ASM164957v2

Organism name:

Kryptolebias marmoratus (mangrove rivulus)

Isolate:

JLee-2015

Sex:

hermaphrodite

BioSample:

SAMN04622665

BioProject:

PRJNA626665

Submitter:

Washington State University

Date:

2020/11/16

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_001649575.2 (latest)

RefSeq assembly accession:

GCF_001649575.2 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

LWHD02

Assembly method:

HiRise v. August-2018

Expected final version:

yes

Reference guided assembly:

GCA_001649575.1

Genome coverage:

72.75x

Sequencing technology:

Illumina HiSeq

IDs: 8552831 [UID] 23208458 [GenBank] 23361268 [RefSeq]

See Genome Information for Kryptolebias marmoratus

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_001649575.2	≠	GCF_001649575.2	ASM164957v2	Chromosome	Latest GenBank, Latest RefSeq
GCA_001649575.1	≠	GCF_001649575.1	ASM164957v1	Scaffold	Replaced GenBank, Replaced RefSeq

Comment

Global statistics

Total sequence length	680,655,669
Total ungapped length	641,841,501
Gaps between scaffolds	0
Number of scaffolds	300
Scaffold N50	28,170,849
Scaffold L50	11
Number of contigs	26,467
Contig N50	57,625
Contig L50	2,936
Total number of chromosomes and plasmids	25
Number of component sequences (WGS or clone)	300

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Linkage Group LG1	CM027009.1	=	NC_051430.1	0
Linkage Group LG2	CM027010.1	=	NC_051431.1	0
Linkage Group LG3	CM027011.1	=	NC_051432.1	0
Linkage Group LG4	CM027012.1	=	NC_051433.1	0
Linkage Group LG5	CM027013.1	=	NC_051434.1	0
Linkage Group LG6	CM027014.1	=	NC_051435.1	0
Linkage Group LG7	CM027015.1	=	NC_051436.1	0
Linkage Group LG8	CM027016.1	=	NC_051437.1	0
Linkage Group LG9	CM027017.1	=	NC_051438.1	0
Linkage Group LG10	CM027018.1	=	NC_051439.1	0
Linkage Group LG11	CM027019.1	=	NC_051440.1	0
Linkage Group LG12	CM027020.1	=	NC_051441.1	0
Linkage Group LG13	CM027021.1	=	NC_051442.1	0
Linkage Group LG14	CM027022.1	=	NC_051443.1	0
Linkage Group LG15	CM027023.1	=	NC_051444.1	0
Linkage Group LG16	CM027024.1	=	NC_051445.1	0
Linkage Group LG17	CM027025.1	=	NC_051446.1	0
Linkage Group LG18	CM027026.1	=	NC_051447.1	0
Linkage Group LG19	CM027027.1	=	NC_051448.1	0
Linkage Group LG20	CM027028.1	=	NC_051449.1	0
Linkage Group LG21	CM027029.1	=	NC_051450.1	0
Linkage Group LG22	CM027030.1	=	NC_051451.1	0
Linkage Group LG23	CM027031.1	=	NC_051452.1	0
Linkage Group LG24	CM027032.1	=	NC_051453.1	0
unplaced	n/a	n/a	n/a	275

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	680,638,340	299	641,824,172	28,170,849	26,167
Linkage Group LG1	36,055,409	1	34,004,437	36,055,409	1,385
Linkage Group LG2	38,021,566	1	35,745,023	38,021,566	1,560
Linkage Group LG3	30,308,220	1	28,840,308	30,308,220	926
Linkage Group LG4	31,635,803	1	30,139,282	31,635,803	1,082
Linkage Group LG5	26,405,665	1	24,969,156	26,405,665	997
Linkage Group LG6	32,959,753	1	30,877,827	32,959,753	1,166
Linkage Group LG7	25,224,937	1	23,474,229	25,224,937	1,356
Linkage Group LG8	29,823,675	1	28,354,783	29,823,675	1,057
Linkage Group LG9	31,381,257	1	29,672,403	31,381,257	1,261
Linkage Group LG10	24,187,473	1	22,799,521	24,187,473	837
Linkage Group LG11	28,170,849	1	26,688,384	28,170,849	1,001
Linkage Group LG12	25,385,827	1	24,000,529	25,385,827	929
Linkage Group LG13	27,675,197	1	26,195,582	27,675,197	986
Linkage Group LG14	26,915,974	1	25,129,671	26,915,974	1,174
Linkage Group LG15	35,210,754	1	33,387,329	35,210,754	1,205
Linkage Group LG16	32,119,081	1	30,590,235	32,119,081	1,184
Linkage Group LG17	27,345,067	1	25,561,235	27,345,067	1,088
Linkage Group LG18	21,005,923	1	19,561,293	21,005,923	898
Linkage Group LG19	24,173,741	1	22,648,693	24,173,741	973
Linkage Group LG20	27,342,780	1	26,008,949	27,342,780	872
Linkage Group LG21	23,684,088	1	22,385,212	23,684,088	972
Linkage Group LG22	29,747,159	1	28,072,718	29,747,159	1,081
Linkage Group LG23	16,787,741	1	15,460,458	16,787,741	1,024
Linkage Group LG24	23,254,736	1	22,434,923	23,254,736	460
unplaced	5,815,665	275	4,821,992	41,427	693

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ASM164957v2

See Genome Information for Kryptolebias marmoratus

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Unit Name
Primary Assembly
non-nuclear