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Rhagoletis_zephyria_1.0

  • Anomalous assembly.
Organism name:
Rhagoletis zephyria (snowberry fruit fly)
Isolate:
East Lansing
BioSample:
SAMN04977950
BioProject:
PRJNA321204
Submitter:
University of Illinois at Urbana-Champaign
Date:
2016/07/19
Assembly level:
Scaffold
Genome representation:
full
Assembly anomaly:
contaminated
Excluded from RefSeq:
  • contaminated
GenBank assembly accession:
GCA_001687245.1 (replaced)
RefSeq assembly accession:
GCF_001687245.1 (replaced)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
LYWK01
Assembly method:
SOAPdenovo v. JUL-2013; PBJelly2 v. FEB-2015; L_RNA_Scaffolder v. FEB-2016
Genome coverage:
35.0x
Sequencing technology:
Illumina HiSeq

IDs: 770681 [UID] 3346438 [GenBank] 3360508 [RefSeq]

See Genome Information for Rhagoletis zephyria

History (Show revision history)

Comment

In April 2022 4346 sequences were suppressed because they were found to be contaminants.

Global statistics

Total sequence length1,113,962,544
Total ungapped length1,045,273,524
Gaps between scaffolds0
Number of scaffolds86,670
Scaffold N5062,643
Scaffold L503,479
Number of contigs139,583
Contig N5019,348
Contig L5014,077
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)139,583

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,113,962,54486,6701,045,273,52462,64352,9130