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Aspof.V1

Organism name:
Asparagus officinalis (garden asparagus)
Sex:
male
BioSample:
SAMN04606231
BioProject:
PRJNA317340
Submitter:
University of Georgia
Date:
2017/02/06
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_001876935.1 (latest)
RefSeq assembly accession:
GCF_001876935.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
MPDI01
Assembly method:
SOAPdenovo2 v. r240; PBjelly v. 14.9.9
Expected final version:
yes
Genome coverage:
123.0x
Sequencing technology:
Illumina HiSeq

IDs: 994691 [UID] 4089678 [GenBank] 4159598 [RefSeq]

See Genome Information for Asparagus officinalis

History (Show revision history)

Comment

Global statistics

Total sequence length1,187,538,024
Total ungapped length1,152,016,560
Gaps between scaffolds0
Number of scaffolds11,792
Scaffold N50131,339,754
Scaffold L505
Number of contigs56,182
Contig N5046,553
Contig L507,625
Total number of chromosomes and plasmids10
Number of component sequences (WGS or clone)56,182

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_001876945.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM007381.1=NC_033794.10
Chromosome 2CM007382.1=NC_033795.10
Chromosome 3CM007383.1=NC_033796.10
Chromosome 4CM007384.1=NC_033797.10
Chromosome 5CM007385.1=NC_033798.10
Chromosome 6CM007386.1=NC_033799.10
Chromosome 7CM007387.1=NC_033800.10
Chromosome 8CM007388.1=NC_033801.10
Chromosome 9CM007389.1=NC_033802.10
Chromosome 10CM007390.1=NC_033803.10
unplacedn/an/an/a11,782

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All1,187,538,02411,7921,152,016,560131,339,75444,3900
Chromosome 1132,393,7841129,031,885132,393,7845,0310
Chromosome 284,732,013181,864,17984,732,0133,4100
Chromosome 3113,259,0031110,050,776113,259,0034,4860
Chromosome 4146,560,8591142,765,566146,560,8595,2310
Chromosome 5131,469,5671127,660,553131,469,5675,0180
Chromosome 678,779,235176,676,31678,779,2352,7910
Chromosome 7151,357,9311146,924,081151,357,9315,6210
Chromosome 8131,339,7541127,642,076131,339,7544,9540
Chromosome 968,543,460166,532,93168,543,4602,6570
Chromosome 1073,452,336171,231,81773,452,3362,8560
unplaced75,650,08211,78271,636,38049,0462,3350