U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



NIATTr2

Organism name:
Nicotiana attenuata (eudicots)
Infraspecific name:
Strain: UT
BioSample:
SAMN04590212
BioProject:
PRJNA316810
Submitter:
Max Planck Institute for Chemical Ecology
Date:
2016/11/15
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_001879085.1 (latest)
RefSeq assembly accession:
GCF_001879085.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
MJEQ01
Assembly method:
Celera Assembler v. 7
Expected final version:
no
Genome coverage:
30.0x
Sequencing technology:
Illumina HiSeq; 454; PacBio

IDs: 889921 [UID] 3726648 [GenBank] 3745728 [RefSeq]

See Genome Information for Nicotiana attenuata

Pathogen Detection Resources

There are 3 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length2,365,682,703
Total ungapped length2,090,577,693
Gaps between scaffolds0
Number of scaffolds37,194
Scaffold N50524,499
Scaffold L50420
Number of contigs103,240
Contig N5064,201
Contig L509,648
Total number of chromosomes and plasmids12
Number of component sequences (WGS or clone)37,194

Supplemental Content

Access the data

Assembly Information

Related Information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_001879095.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM007391.1=NC_031989.10
Chromosome 2CM007392.1=NC_031990.10
Chromosome 3CM007393.1=NC_031991.10
Chromosome 4CM007394.1=NC_031992.10
Chromosome 5CM007395.1=NC_031993.10
Chromosome 6CM007396.1=NC_031994.10
Chromosome 7CM007397.1=NC_031995.10
Chromosome 8CM007398.1=NC_031996.10
Chromosome 9CM007399.1=NC_031997.10
Chromosome 10CM007400.1=NC_031998.10
Chromosome 11CM007401.1=NC_031999.10
Chromosome 12CM007402.1=NC_032000.10
unplacedn/an/an/a37,182

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All2,365,682,70337,1942,090,577,693524,49966,0460
Chromosome 1110,538,649195,110,293110,538,6492,4810
Chromosome 296,359,640186,164,42496,359,6402,2390
Chromosome 372,893,213165,776,84972,893,2131,7100
Chromosome 412,333,206111,612,52312,333,2063230
Chromosome 557,012,777153,425,73657,012,7771,3250
Chromosome 697,571,839183,413,76297,571,8392,0700
Chromosome 7114,765,206196,438,266114,765,2062,4090
Chromosome 847,755,514144,697,00147,755,5141,1800
Chromosome 950,975,570146,269,37750,975,5701,0820
Chromosome 1051,082,206146,664,86351,082,2061,2190
Chromosome 1161,252,062149,737,20961,252,0621,2370
Chromosome 1253,491,057148,473,95553,491,0571,1760
unplaced1,539,651,76437,1821,362,793,435246,97747,5950