Asagao_1.1

Organism name:: Ipomoea nil (Japanese morning glory)
Infraspecific name:: Cultivar: Tokyo-kokei standard
BioSample:: SAMD00022859
BioProject:: PRJDB4356
Submitter:: Laboratory of biological diversity / Hoshino group, National Institute for Basic Biology, National Institutes of Natural Sciences
Date:: 2016/09/01
Assembly level:: Scaffold
Genome representation:: full
RefSeq category:: representative genome
GenBank assembly accession:: GCA_001879475.1 (latest)
RefSeq assembly accession:: GCF_001879475.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: BDFN01
Assembly method:: HGAP v. 3 (Contig Assembly); BESST v. 2.1.0 (Scaffolding); PBJelly v. 15.8.24 (Gap-filling)
Genome coverage:: 1231x
Sequencing technology:: PacBio; Illumina HiSeq

IDs: 890161 [UID] 3727168 [GenBank] 3743988 [RefSeq]

See Genome Information for Ipomoea nil

Pathogen Detection Resources

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GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_001879475.1	=	GCF_001879475.1	Asagao_1.1	Scaffold	Latest GenBank, Latest RefSeq

Comment


Grant Information
Agency : Japanese Ministry of Education, Culture, Sports, Science and Technology
Agency abbreviation : MEXT
Grant ID : 221S0002
Grant title : Genome Science
Genome Coverage : 52x (PacBio); 
1231x (Illumina)

Global statistics

Total sequence length	735,230,855
Total ungapped length	735,019,208
Gaps between scaffolds	0
Number of scaffolds	3,418
Scaffold N50	2,880,368
Scaffold L50	76
Number of contigs	3,867
Contig N50	1,873,359
Contig L50	107
Total number of chromosomes and plasmids	2
Number of component sequences (WGS or clone)	3,418

Molecule name	GenBank ID		RefSeq ID
Mitochondrion MT	AP017303.1	=	NC_031158.1
Chloroplast Pltd	AP017304.1	=	NC_031159.1

Molecule	Total Length
All	427,665
Mitochondrion MT	265,768
Chloroplast Pltd	161,897

Assembly

Genome Assembly

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Asagao_1.1

See Genome Information for Ipomoea nil

Pathogen Detection Resources

History (Show revision history)

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Global assembly definition

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Assembly Unit Name
Primary Assembly
non-nuclear