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ASM191719v1

Organism name:
Desulfovibrio piger (bacteria)
Taxonomy check:
OK
Isolate:
64_16
BioSample:
SAMN05717306
BioProject:
PRJNA321218
Submitter:
None
Date:
2016/12/23
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
GenBank assembly accession:
GCA_001917195.1 (latest)
RefSeq assembly accession:
GCF_001917195.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
MNTW01
Assembly method:
IDBA_UD v. 1.1
Genome coverage:
1x
Sequencing technology:
Illumina HiSeq

IDs: 932561 [UID] 3917398 [GenBank] 42104538 [RefSeq]

See Genome Information for Desulfovibrio piger

There are 66 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/31/2016 12:57:49
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::3.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,213
CDS (total)::2,142
Genes (coding)::2,064
CDS (coding)::2,064
Genes (RNA)::71
rRNAs::2, 3 (5S, 23S)
complete rRNAs::2 (5S)
partial rRNAs::3 (23S)
tRNAs::60
ncRNAs::6
Pseudo Genes (total)::78
Pseudo Genes (ambiguous residues)::5 of 78
Pseudo Genes (frameshifted)::42 of 78
Pseudo Genes (incomplete)::34 of 78
Pseudo Genes (internal stop)::3 of 78
Pseudo Genes (multiple problems)::6 of 78
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,563,598
Total ungapped length2,562,970
Gaps between scaffolds0
Number of scaffolds62
Scaffold N5073,543
Scaffold L5012
Number of contigs75
Contig N5059,532
Contig L5014
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)62

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,563,598622,562,97073,543130

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Desulfovibrio pigerDesulfovibrio piger

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000156375.1Desulfovibrio piger ATCC 29098suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000156375.1Desulfovibrio pigersuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.7094.9386.09
Best-match type98.7094.9386.09

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna