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Source database (GenBank or RefSeq) File type

HanXRQr2.0-SUNRISE

Organism name:

Helianthus annuus (common sunflower)

Infraspecific name:

Cultivar: XRQ/B

BioSample:

SAMN05868438

BioProject:

PRJNA345532

Submitter:

International Consortium for Sunflower Genomics

Date:

2020/07/15

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_002127325.2 (latest)

RefSeq assembly accession:

GCF_002127325.2 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Different: chromosomes MT and Pltd.

Data displayed for RefSeq version

WGS Project:

MNCJ02

Assembly method:

CANU v. 1.3; CANU v. 1.4; FALCON v. 0.7; Bionano-Solve v. 3.2.1_04122018

Expected final version:

Genome coverage:

100.0x

Sequencing technology:

PacBio RSII

IDs: 7358721 [UID] 20371458 [GenBank] 21526908 [RefSeq]

See Genome Information for Helianthus annuus

Pathogen Detection Resources

There are 9 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_002127325.2	≠	GCF_002127325.2	HanXRQr2.0-SUNRISE	Chromosome	Latest GenBank, Latest RefSeq
GCA_002127325.1	≠	GCF_002127325.1	HanXRQr1.0	Chromosome	Replaced GenBank, Replaced RefSeq

Comment

Global statistics

Total sequence length	3,010,047,587
Total ungapped length	2,948,144,550
Gaps between scaffolds	0
Number of scaffolds	334
Scaffold N50	176,490,873
Scaffold L50	8
Number of contigs	2,714
Contig N50	2,005,037
Contig L50	448
Total number of chromosomes and plasmids	19
Number of component sequences (WGS or clone)	334

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM007890.2	=	NC_035433.2	0
Chromosome 2	CM007891.2	=	NC_035434.2	0
Chromosome 3	CM007892.2	=	NC_035435.2	0
Chromosome 4	CM007893.2	=	NC_035436.2	0
Chromosome 5	CM007894.2	=	NC_035437.2	0
Chromosome 6	CM007895.2	=	NC_035438.2	0
Chromosome 7	CM007896.2	=	NC_035439.2	0
Chromosome 8	CM007897.2	=	NC_035440.2	0
Chromosome 9	CM007898.2	=	NC_035441.2	0
Chromosome 10	CM007899.2	=	NC_035442.2	0
Chromosome 11	CM007900.2	=	NC_035443.2	0
Chromosome 12	CM007901.2	=	NC_035444.2	0
Chromosome 13	CM007902.2	=	NC_035445.2	0
Chromosome 14	CM007903.2	=	NC_035446.2	0
Chromosome 15	CM007904.2	=	NC_035447.2	0
Chromosome 16	CM007905.2	=	NC_035448.2	0
Chromosome 17	CM007906.2	=	NC_035449.2	0
unplaced	n/a	n/a	n/a	315

Molecule name	GenBank ID		RefSeq ID
Mitochondrion MT	KF815390.1	=	NC_023337.1
Chloroplast Pltd	DQ383815.1	=	NC_007977.1

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	3,009,595,538	332	2,947,692,501	176,490,873	2,380
Chromosome 1	149,502,186	1	146,781,638	149,502,186	118
Chromosome 2	174,800,439	1	171,931,713	174,800,439	125
Chromosome 3	176,490,873	1	172,278,191	176,490,873	146
Chromosome 4	208,320,189	1	204,287,366	208,320,189	176
Chromosome 5	178,169,690	1	174,547,813	178,169,690	137
Chromosome 6	148,147,350	1	144,767,033	148,147,350	128
Chromosome 7	149,542,083	1	145,616,893	149,542,083	111
Chromosome 8	167,167,940	1	163,820,636	167,167,940	124
Chromosome 9	189,665,024	1	185,494,824	189,665,024	143
Chromosome 10	181,411,567	1	178,006,829	181,411,567	149
Chromosome 11	189,830,405	1	186,652,990	189,830,405	132
Chromosome 12	163,781,230	1	160,781,186	163,781,230	118
Chromosome 13	173,487,274	1	169,441,160	173,487,274	131
Chromosome 14	173,346,949	1	169,004,771	173,346,949	166
Chromosome 15	175,671,323	1	172,609,528	175,671,323	150
Chromosome 16	206,736,614	1	202,517,681	206,736,614	176
Chromosome 17	195,042,445	1	190,689,596	195,042,445	148
unplaced	8,481,957	315	8,462,653	40,966	2

Molecule	Total Length
All	452,049
Mitochondrion MT	300,945
Chloroplast Pltd	151,104

Assembly

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HanXRQr2.0-SUNRISE

See Genome Information for Helianthus annuus

Pathogen Detection Resources

There are 9 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Unit Name
Primary Assembly
non-nuclear