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ASM216537v2

Organism name:
Acinetobacter chinensis (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: WCHAc010005
BioSample:
SAMN07138949
BioProject:
PRJNA387062
Submitter:
West China Hospital, Sichuan University
Date:
2018/09/12
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_002165375.2 (latest)
RefSeq assembly accession:
GCF_002165375.2 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Unicycler v. 0.4.6
Expected final version:
yes
Genome coverage:
200.0x
Sequencing technology:
Illumina HiSeq; MinION

IDs: 1968211 [UID] 7423248 [GenBank] 7454428 [RefSeq]

See Genome Information for Acinetobacter chinensis

There are 3 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::11/26/2023 02:09:03
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,604
CDSs (total)::3,496
Genes (coding)::3,440
CDSs (with protein)::3,440
Genes (RNA)::108
rRNAs::7, 7, 7 (5S, 16S, 23S)
complete rRNAs::7, 7, 7 (5S, 16S, 23S)
tRNAs::83
ncRNAs::4
Pseudo Genes (total)::56
CDSs (without protein)::56
Pseudo Genes (ambiguous residues)::0 of 56
Pseudo Genes (frameshifted)::13 of 56
Pseudo Genes (incomplete)::43 of 56
Pseudo Genes (internal stop)::10 of 56
Pseudo Genes (multiple problems)::10 of 56
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,737,289
Total ungapped length3,737,289
Total number of chromosomes and plasmids8

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_002165395.2)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP032134.1=NZ_CP032134.1
Plasmid p1_010005CP032127.1=NZ_CP032127.1
Plasmid pNDM1_010005CP032132.1=NZ_CP032132.1
Plasmid p2_010005CP032128.1=NZ_CP032128.1
Plasmid p3_010005CP032129.1=NZ_CP032129.1
Plasmid p4_010005CP032130.1=NZ_CP032130.1
Plasmid p5_010005CP032131.1=NZ_CP032131.1
Plasmid pOXA58_010005CP032133.1=NZ_CP032133.1

Assembly statistics

MoleculeTotal
Length
All3,737,289
Chromosome 3,600,635
Plasmid p1_01000518,155
Plasmid pNDM1_01000539,357
Plasmid p2_0100055,433
Plasmid p3_0100054,353
Plasmid p4_0100051,398
Plasmid p5_0100051,243
Plasmid pOXA58_01000566,715

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Acinetobacter chinensisAcinetobacter chinensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001696605.3Acinetobacter wuhouensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type87.3223.7722.43

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected