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Source database (GenBank or RefSeq) File type

ASM220157v2

Organism name:

Neomonachus schauinslandi (Hawaiian monk seal)

Sex:

male

BioSample:

SAMN06841387

BioProject:

PRJNA384558

Submitter:

Johns Hopkins University

Date:

2021/10/20

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_002201575.2 (latest)

RefSeq assembly accession:

GCF_002201575.2 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in GenBank: chromosome MT

Data displayed for RefSeq version

WGS Project:

NINY02

Assembly method:

Supernova v. 2.1.1; BioNano Solve v. 3.6.1; 3d-dna v. 180419; PILON v. 1.22

Expected final version:

yes

Genome coverage:

56.0x

Sequencing technology:

Illumina HiSeq; BioNano Saphyr; Illumina NovaSeq; Oxford Nanopore GridION

IDs: 11254791 [UID] 29669218 [GenBank] 29844128 [RefSeq]

See Genome Information for Neomonachus schauinslandi

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_002201575.2	≠	GCF_002201575.2	ASM220157v2	Chromosome	Latest GenBank, Latest RefSeq
GCA_002201575.1	≠	GCF_002201575.1	ASM220157v1	Scaffold	Replaced GenBank, Replaced RefSeq

Comment

Global statistics

Total sequence length	2,419,443,398
Total ungapped length	2,376,537,768
Gaps between scaffolds	0
Number of scaffolds	8,094
Scaffold N50	150,810,825
Scaffold L50	7
Number of contigs	33,881
Contig N50	181,061
Contig L50	3,875
Total number of chromosomes and plasmids	18
Number of component sequences (WGS or clone)	8,094

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM035896.1	=	NC_058403.1	0
Chromosome 2	CM035898.1	=	NC_058404.1	0
Chromosome 3	CM035899.1	=	NC_058405.1	0
Chromosome 4	CM035900.1	=	NC_058406.1	0
Chromosome 5	CM035901.1	=	NC_058407.1	0
Chromosome 6	CM035902.1	=	NC_058408.1	0
Chromosome 7	CM035903.1	=	NC_058409.1	0
Chromosome 8	CM035904.1	=	NC_058410.1	0
Chromosome 9	CM035905.1	=	NC_058411.1	0
Chromosome 10	CM035906.1	=	NC_058412.1	0
Chromosome 11	CM035907.1	=	NC_058413.1	0
Chromosome 12	CM035908.1	=	NC_058414.1	0
Chromosome 13	CM035909.1	=	NC_058415.1	0
Chromosome 14	CM035910.1	=	NC_058416.1	0
Chromosome 15	CM035911.1	=	NC_058417.1	0
Chromosome 16	CM035912.1	=	NC_058418.1	0
Chromosome X	CM035897.1	=	NC_058419.1	0
Chromosome Y	CM035913.1	=	NC_058420.1	0
unplaced	n/a	n/a	n/a	8,076

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	2,419,443,398	8,094	2,376,537,768	150,810,825	25,787
Chromosome 1	214,683,177	1	212,759,172	214,683,177	2,134
Chromosome 2	203,868,124	1	201,177,844	203,868,124	1,907
Chromosome 3	192,837,575	1	191,618,337	192,837,575	1,672
Chromosome 4	188,184,182	1	186,283,135	188,184,182	1,723
Chromosome 5	176,495,000	1	174,534,795	176,495,000	1,779
Chromosome 6	154,800,178	1	153,275,618	154,800,178	1,567
Chromosome 7	150,810,825	1	149,638,422	150,810,825	1,432
Chromosome 8	145,934,095	1	144,699,063	145,934,095	1,366
Chromosome 9	143,866,539	1	142,076,664	143,866,539	1,506
Chromosome 10	138,407,175	1	136,946,527	138,407,175	1,371
Chromosome 11	111,078,957	1	109,235,119	111,078,957	1,247
Chromosome 12	105,934,835	1	104,624,730	105,934,835	1,097
Chromosome 13	93,674,568	1	92,314,804	93,674,568	1,020
Chromosome 14	92,428,956	1	90,583,150	92,428,956	1,023
Chromosome 15	60,016,530	1	58,999,330	60,016,530	892
Chromosome 16	59,465,005	1	58,232,453	59,465,005	859
Chromosome X	126,494,893	1	123,250,741	126,494,893	1,648
Chromosome Y	5,277,812	1	4,955,936	5,277,812	184
unplaced	55,184,972	8,076	41,331,928	14,087	1,360

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ASM220157v2

See Genome Information for Neomonachus schauinslandi

Pathogen Detection Resources

History (Show revision history)

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