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ASM233502v1

Organism name:
Thiothrix sp. UBA2016 (g-proteobacteria)
Taxonomy check:
OK
Isolate:
UBA2016
BioSample:
SAMN06451671
BioProject:
PRJNA348753
Submitter:
University of Queensland
Date:
2017/09/21
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
GenBank assembly accession:
GCA_002335025.1 (latest)
RefSeq assembly accession:
GCF_002335025.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
DDCC01
Assembly method:
CLC de novo assembler v. 4.4.1
Expected final version:
yes
Genome coverage:
155.75x
Sequencing technology:
Illumina

IDs: 1215911 [UID] 5056768 [GenBank] 44948578 [RefSeq]

See Genome Information for Thiothrix sp. UBA2016

History (Show revision history)

Comment

Global statistics

Total sequence length3,691,866
Total ungapped length3,685,687
Gaps between scaffolds0
Number of scaffolds48
Scaffold N50109,917
Scaffold L5011
Number of contigs71
Contig N5093,330
Contig L5014
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)48

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,691,866483,685,687109,917230

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Thiothrix sp. UBA2016Thiothrix sp. UBA2016

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_021650935.1Thiothrix winogradskyitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type84.4120.0416.86

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna