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Stylophora pistillata v1

  • Anomalous assembly.
Organism name:
Stylophora pistillata (stony corals)
Isolate:
CSM Monaco
BioSample:
SAMN03491624
BioProject:
PRJNA281535
Submitter:
KAUST
Date:
2017/10/17
Assembly level:
Scaffold
Genome representation:
full
Assembly anomaly:
contaminated
Excluded from RefSeq:
  • contaminated
GenBank assembly accession:
GCA_002571385.1 (replaced)
RefSeq assembly accession:
GCF_002571385.1 (replaced)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
LSMT01
Assembly method:
AllPaths v. r44837
Expected final version:
no
Genome coverage:
476.0x
Sequencing technology:
Illumina HiSeq

IDs: 1339201 [UID] 5388908 [GenBank] 5480888 [RefSeq]

See Genome Information for Stylophora pistillata

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

In March 2023 175 sequences were suppressed because they were found to be contaminants.

Global statistics

Total sequence length400,120,318
Total ungapped length357,996,474
Gaps between scaffolds0
Number of scaffolds5,688
Scaffold N50457,453
Scaffold L50246
Number of contigs37,615
Contig N5020,604
Contig L504,779
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)5,688

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced400,103,1415,687357,979,297457,45331,9270
MoleculeTotal
Length
Mitochondrion MT17,177