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AmpOce1.0

Organism name:
Amphiprion ocellaris (clown anemonefish)
Isolate:
DU_AmpOce
BioSample:
SAMN07982614
BioProject:
PRJNA407816
Submitter:
Deakin University
Date:
2017/11/16
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • superseded by newer assembly for species
GenBank assembly accession:
GCA_002776465.1 (latest)
RefSeq assembly accession:
GCF_002776465.1 (suppressed) see latest RefSeq assembly for this species
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for GenBank version
WGS Project:
NXFZ01
Assembly method:
MaSuRCA v. 3.2.2
Expected final version:
yes
Genome coverage:
45.0x
Sequencing technology:
Illumina HiSeq; Oxford Nanopore MinION

IDs: 1441841 [UID] 5657178 [GenBank] 5739858 [RefSeq]

See Genome Information for Amphiprion ocellaris

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length880,704,246
Total ungapped length880,159,076
Gaps between scaffolds0
Number of scaffolds6,404
Scaffold N50401,715
Scaffold L50631
Number of contigs7,802
Contig N50324,210
Contig L50756
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)6,404

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced880,704,2466,404880,159,076401,7151,3980