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Source database (GenBank or RefSeq) File type

ASM280686v2

This assembly has been replaced. See current version

Organism name:

Cucurbita pepo subsp. pepo (vegetable marrow)

Infraspecific name:

Cultivar: mu-cu-16

BioSample:

SAMN07125871

BioProject:

PRJNA386743

Submitter:

Comav-UPV

Date:

2017/12/07

Assembly level:

Chromosome

Genome representation:

full

GenBank assembly accession:

GCA_002806865.2 (latest)

RefSeq assembly accession:

GCF_002806865.1 (replaced)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in GenBank: 102 unplaced scaffolds
Only in RefSeq: chromosome MT
RefSeq dropped 102 scaffolds that were foreign or mitochondrial

Data displayed for RefSeq version

WGS Project:

NHTM01

Assembly method:

SOAPdenovo v. r240; BreakScaffolds v. git; SSPADE v. 3.0

Expected final version:

yes

Genome coverage:

198.0x

Sequencing technology:

Illumina HiSeq

IDs: 1531461 [UID] 5715628 [GenBank] 5902938 [RefSeq]

See Genome Information for Cucurbita pepo

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_002806865.2	≠	GCF_002806865.2	ASM280686v2	Chromosome	Latest GenBank, Latest RefSeq
GCA_002806865.2	≠	GCF_002806865.1	ASM280686v2	Chromosome	Latest GenBank, Replaced RefSeq
GCA_002806865.1	n/a	n/a	ASM280686v1	Scaffold	Replaced GenBank

Comment

Global statistics

Total sequence length	261,354,759
Total ungapped length	246,338,433
Gaps between scaffolds	0
Number of scaffolds	25,263
Scaffold N50	9,833,969
Scaffold L50	11
Number of contigs	31,835
Contig N50	109,364
Contig L50	617
Total number of chromosomes and plasmids	21
Number of component sequences (WGS or clone)	25,263

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome LG01	CM008918.1	=	NC_036638.1	0
Chromosome LG02	CM008919.1	=	NC_036639.1	0
Chromosome LG03	CM008920.1	=	NC_036640.1	0
Chromosome LG04	CM008921.1	=	NC_036641.1	0
Chromosome LG05	CM008922.1	=	NC_036642.1	0
Chromosome LG06	CM008923.1	=	NC_036643.1	0
Chromosome LG07	CM008924.1	=	NC_036644.1	0
Chromosome LG08	CM008925.1	=	NC_036645.1	0
Chromosome LG09	CM008926.1	=	NC_036646.1	0
Chromosome LG10	CM008927.1	=	NC_036647.1	0
Chromosome LG11	CM008928.1	=	NC_036648.1	0
Chromosome LG12	CM008929.1	=	NC_036649.1	0
Chromosome LG13	CM008930.1	=	NC_036650.1	0
Chromosome LG14	CM008931.1	=	NC_036651.1	0
Chromosome LG15	CM008932.1	=	NC_036652.1	0
Chromosome LG16	CM008933.1	=	NC_036653.1	0
Chromosome LG17	CM008934.1	=	NC_036654.1	0
Chromosome LG18	CM008935.1	=	NC_036655.1	0
Chromosome LG19	CM008936.1	=	NC_036656.1	0
Chromosome LG20	CM008937.1	=	NC_036657.1	0
unplaced	n/a	n/a	n/a	25,242

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	260,371,926	25,262	245,355,600	9,833,969	6,572
Chromosome LG01	21,320,769	1	20,906,361	21,320,769	343
Chromosome LG02	14,376,414	1	13,977,048	14,376,414	264
Chromosome LG03	13,772,414	1	13,611,024	13,772,414	206
Chromosome LG04	12,709,140	1	12,508,511	12,709,140	188
Chromosome LG05	10,865,678	1	10,734,921	10,865,678	159
Chromosome LG06	10,677,745	1	10,367,486	10,677,745	220
Chromosome LG07	10,147,556	1	9,921,942	10,147,556	179
Chromosome LG08	10,059,303	1	9,982,467	10,059,303	118
Chromosome LG09	9,920,322	1	9,801,878	9,920,322	121
Chromosome LG10	9,835,092	1	9,693,506	9,835,092	147
Chromosome LG11	9,833,969	1	9,633,049	9,833,969	166
Chromosome LG12	9,824,194	1	9,694,731	9,824,194	126
Chromosome LG13	9,354,089	1	9,200,365	9,354,089	169
Chromosome LG14	8,955,933	1	8,692,199	8,955,933	195
Chromosome LG15	8,816,444	1	8,627,908	8,816,444	152
Chromosome LG16	8,691,934	1	8,451,247	8,691,934	158
Chromosome LG17	8,680,504	1	8,530,283	8,680,504	142
Chromosome LG18	8,333,454	1	8,154,704	8,333,454	144
Chromosome LG19	8,246,682	1	8,167,330	8,246,682	108
Chromosome LG20	8,120,804	1	7,970,040	8,120,804	141
unplaced	47,829,486	25,242	36,728,600	24,463	3,126

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ASM280686v2

See Genome Information for Cucurbita pepo

Pathogen Detection Resources

History (Show revision history)

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Assembly Unit Name
Primary Assembly
non-nuclear