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ASM283546v1

Organism name:
Psychromonas sp. psych-6C06 (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: psych-6C06
BioSample:
SAMN08130274
BioProject:
PRJNA414740
Submitter:
Massachusetts Institute of Technology
Date:
2017/12/12
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_002835465.1 (latest)
RefSeq assembly accession:
GCF_002835465.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
PIZM01
Assembly method:
CLC NGS Cell v. 10
Expected final version:
yes
Genome coverage:
50.0x
Sequencing technology:
Illumina MiSeq

IDs: 1488311 [UID] 5772928 [GenBank] 5784918 [RefSeq]

See Genome Information for Psychromonas sp. psych-6C06

History (Show revision history)

Comment

Bacteria and source DNA available from Otto X. Cordero | Assistant Professor | Parsons Laboratory, Civil and Environ. Eng. MIT, 48-429 | 6172532679.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can ... be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::12/05/2017 18:21:14
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,312
CDS (total)::3,229
Genes (coding)::3,201
CDS (coding)::3,201
Genes (RNA)::83
rRNAs::9 (5S)
complete rRNAs::9 (5S)
partial rRNAs::
tRNAs::70
ncRNAs::4
Pseudo Genes (total)::28
Pseudo Genes (ambiguous residues)::0 of 28
Pseudo Genes (frameshifted)::11 of 28
Pseudo Genes (incomplete)::15 of 28
Pseudo Genes (internal stop)::8 of 28
Pseudo Genes (multiple problems)::5 of 28
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,719,886
Total ungapped length3,719,784
Gaps between scaffolds0
Number of scaffolds32
Scaffold N50539,979
Scaffold L503
Number of contigs34
Contig N50362,343
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)32

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,719,886323,719,784539,97920

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Psychromonas sp. psych-6C06Psychromonas sp. psych-6C06

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_030161115.1Psychromonas marinatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type82.2421.7418.32

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna