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Source database (GenBank or RefSeq) File type

ASM283717v5

Organism name:

Physeter catodon (sperm whale)

Isolate:

SW-GA

Sex:

female

BioSample:

SAMN07836523

BioProject:

PRJNA411766

Submitter:

BGI

Date:

2023/02/28

Release type:

minor

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_002837175.5 (latest)

RefSeq assembly accession:

GCF_002837175.3 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

PGGR02

Assembly method:

SOAPdenovo v. SEP-2017; ARCS pipeline v. SEP-2017; Supernova v. SEP-2017

Genome coverage:

248x

Sequencing technology:

BGISEQ-500

IDs: 16316381 [UID] 41835818 [GenBank] 41926838 [RefSeq]

See Genome Information for Physeter catodon

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_002837175.5	≠	GCF_002837175.3	ASM283717v5	Chromosome	Latest GenBank, Latest RefSeq
GCA_002837175.4	n/a	n/a	ASM283717v4	Chromosome	Replaced GenBank
GCA_002837175.2	≠	GCF_002837175.2	ASM283717v2	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_002837175.1	≠	GCF_002837175.1	ASM283717v1	Scaffold	Replaced GenBank, Replaced RefSeq

Comment

In March 2023 540 sequences were suppressed because they were found to be contaminants.

Global statistics

Total sequence length	2,496,225,537
Total ungapped length	2,391,312,771
Gaps between scaffolds	0
Number of scaffolds	12,169
Scaffold N50	122,182,240
Scaffold L50	9
Number of contigs	133,555
Contig N50	42,877
Contig L50	16,949
Total number of chromosomes and plasmids	22
Number of component sequences (WGS or clone)	133,555

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM014785.2	=	NC_041214.2	0
Chromosome 2	CM014786.1	=	NC_041215.1	0
Chromosome 3	CM014787.1	=	NC_041216.1	0
Chromosome 4	CM014788.1	=	NC_041217.1	0
Chromosome 5	CM014789.1	=	NC_041218.1	0
Chromosome 6	CM014790.1	=	NC_041219.1	0
Chromosome 7	CM014791.1	=	NC_041220.1	0
Chromosome 8	CM014792.1	=	NC_041221.1	0
Chromosome 9	CM014793.1	=	NC_041222.1	0
Chromosome 10	CM014794.1	=	NC_041223.1	0
Chromosome 11	CM014795.1	=	NC_041224.1	0
Chromosome 12	CM014796.1	=	NC_041225.1	0
Chromosome 13	CM014797.1	=	NC_041226.1	0
Chromosome 14	CM014798.1	=	NC_041227.1	0
Chromosome 15	CM014799.1	=	NC_041228.1	0
Chromosome 16	CM014800.1	=	NC_041229.1	0
Chromosome 17	CM014801.1	=	NC_041230.1	0
Chromosome 18	CM014802.1	=	NC_041231.1	0
Chromosome 19	CM014803.1	=	NC_041232.1	0
Chromosome 20	CM014804.1	=	NC_041233.1	0
Chromosome 21	CM014805.1	=	NC_041234.1	0
unplaced	n/a	n/a	n/a	12,147

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	2,496,209,109	12,168	2,391,296,343	122,182,240	121,387
Chromosome 1	145,741,392	1	127,636,605	145,741,392	6,178
Chromosome 2	138,938,390	1	134,444,016	138,938,390	6,520
Chromosome 3	32,278,195	1	31,305,393	32,278,195	1,513
Chromosome 4	147,307,960	1	142,524,317	147,307,960	6,831
Chromosome 5	108,038,726	1	104,677,620	108,038,726	5,138
Chromosome 6	100,269,799	1	97,066,221	100,269,799	4,886
Chromosome 7	158,831,508	1	153,659,075	158,831,508	7,639
Chromosome 8	161,983,147	1	156,858,068	161,983,147	7,659
Chromosome 9	108,825,865	1	105,220,397	108,825,865	5,152
Chromosome 10	88,025,566	1	85,502,141	88,025,566	4,030
Chromosome 11	182,843,547	1	176,960,087	182,843,547	8,788
Chromosome 12	91,207,052	1	88,370,710	91,207,052	4,270
Chromosome 13	88,519,225	1	86,018,165	88,519,225	3,835
Chromosome 14	132,988,635	1	128,934,511	132,988,635	6,031
Chromosome 15	81,469,695	1	79,037,612	81,469,695	3,637
Chromosome 16	104,445,197	1	101,066,558	104,445,197	4,944
Chromosome 17	55,761,687	1	54,104,268	55,761,687	2,535
Chromosome 18	108,757,679	1	105,189,427	108,757,679	5,280
Chromosome 19	88,490,461	1	85,730,893	88,490,461	3,955
Chromosome 20	123,176,288	1	118,921,844	123,176,288	6,070
Chromosome 21	122,182,240	1	116,919,370	122,182,240	6,832
unplaced	126,126,855	12,147	111,149,045	40,491	9,664

Assembly

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ASM283717v5

See Genome Information for Physeter catodon

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

Comment

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Assembly Information

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Assembly Unit Name
Primary Assembly
non-nuclear