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IDs: 1642151 [UID] 5907448 [GenBank] 6084388 [RefSeq]
This is the whole-genome assembly of a male chimpanzee, Clint (Yerkes pedigree number C0471). Genome assembly was done in stages, incorporating data from multiple genomic platforms including PacBio, Illumina, and BioNano optical maps, resulting in three progressive versions: V0 (GCA_002880755.1): ... The backbone of the assembly is made up of contigs obtained by assembling the PacBio (P6-C4 chemistry) reads using the Falcon assembler. These contigs are error-corrected using the tool Quiver and then further error-corrected using Pilon with 37-fold Illumina paired-end reads. V1 (GCA_002880755.2): BioNano optical maps are used to place the contigs into scaffolds, followed by chromosome-level scaffolding using bicolor FISH. V2 (GCA_002880755.3): The assembly is further error-corrected, particularly in regions that have clustered 1-2 bp indels. This is done by applying an Eichler-lab-created Freebayes-based indel correction method. more
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