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ASM290298v1

Organism name:
Leclercia sp. LSNIH1 (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: LSNIH1
BioSample:
SAMN06040403
BioProject:
PRJNA430813
Submitter:
NIH
Date:
2018/01/29
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_002902985.1 (latest)
RefSeq assembly accession:
GCF_002902985.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
canu v. 1.3
Expected final version:
yes
Genome coverage:
250x
Sequencing technology:
PacBio RSII

IDs: 1545761 [UID] 5956258 [GenBank] 5967148 [RefSeq]

See Genome Information for Leclercia sp. LSNIH1

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria available from Karen Frank, Department of Laboratory Medicine, National Institutes of Health Clinical Center.

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::01/24/2024 11:51:57
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,292
CDSs (total)::5,170
Genes (coding)::5,037
CDSs (with protein)::5,037
Genes (RNA)::122
rRNAs::9, 8, 8 (5S, 16S, 23S)
complete rRNAs::9, 8, 8 (5S, 16S, 23S)
tRNAs::84
ncRNAs::13
Pseudo Genes (total)::133
CDSs (without protein)::133
Pseudo Genes (ambiguous residues)::0 of 133
Pseudo Genes (frameshifted)::43 of 133
Pseudo Genes (incomplete)::99 of 133
Pseudo Genes (internal stop)::22 of 133
Pseudo Genes (multiple problems)::27 of 133
Pseudo Genes (short protein)::1 of 133
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,411,940
Total ungapped length5,411,940
Total number of chromosomes and plasmids5

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_002902995.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP026167.1=NZ_CP026167.1
Plasmid pLEC-000fCP026170.1=NZ_CP026170.1
Plasmid pLEC-1cb1CP026171.1=NZ_CP026171.1
Plasmid pLEC-b38dCP026168.1=NZ_CP026168.1
Plasmid pKPC-79f0CP026169.1=NZ_CP026169.1

Assembly statistics

MoleculeTotal
Length
All5,411,940
Chromosome 4,832,521
Plasmid pLEC-000f128,920
Plasmid pLEC-1cb1341,250
Plasmid pLEC-b38d50,622
Plasmid pKPC-79f058,627

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Leclercia sp. LSNIH1Leclercia sp. LSNIH1

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_025566055.1Leclercia tamuraetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type89.5873.4184.25

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna