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Source database (GenBank or RefSeq) File type

EL10_1.0

Organism name:

Beta vulgaris subsp. vulgaris (beet)

Infraspecific name:

Cultivar: EL10

BioSample:

SAMN07736104

BioProject:

PRJNA413079

Submitter:

USDA-ARS

Date:

2018/02/06

Assembly level:

Chromosome

Genome representation:

full

Excluded from RefSeq:

superseded by newer assembly for species

GenBank assembly accession:

GCA_002917755.1 (latest)

RefSeq assembly accession:

GCF_002917755.1 (suppressed)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosomes MT and Pltd

Data displayed for GenBank version

WGS Project:

PCNB01

Assembly method:

Falcon v. 0.2.2; Sequential, Two-enzyme BioNano Scaffolding v. DEC-2015; LACHESIS v. FEB-2017

Expected final version:

Genome coverage:

1.0x

Sequencing technology:

PacBio; Illumina HiSeq; BioNano physical map

IDs: 1555231 [UID] 5994678 [GenBank] 33745148 [RefSeq]

See Genome Information for Beta vulgaris

Pathogen Detection Resources

There are 235 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_002917755.1	≠	GCF_002917755.1	EL10_1.0	Chromosome	Latest GenBank, RefSeq suppressed

Comment

Global statistics

Total sequence length	540,534,112
Total ungapped length	540,479,261
Gaps between scaffolds	0
Number of scaffolds	40
Scaffold N50	57,938,902
Scaffold L50	5
Number of contigs	363
Contig N50	2,700,559
Contig L50	64
Total number of chromosomes and plasmids	9
Number of component sequences (WGS or clone)	40

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM009438.1	=	NC_064017.1	0
Chromosome 2	CM009439.1	=	NC_064018.1	0
Chromosome 3	CM009440.1	=	NC_064019.1	0
Chromosome 4	CM009441.1	=	NC_064020.1	0
Chromosome 5	CM009442.1	=	NC_064021.1	0
Chromosome 6	CM009443.1	=	NC_064022.1	0
Chromosome 7	CM009444.1	=	NC_064023.1	0
Chromosome 8	CM009445.1	=	NC_064024.1	0
Chromosome 9	CM009446.1	=	NC_064025.1	0
unplaced	n/a	n/a	n/a	31

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	540,534,112	40	540,479,261	57,938,902	323
Chromosome 1	58,086,001	1	58,076,156	58,086,001	46
Chromosome 2	54,970,872	1	54,968,247	54,970,872	28
Chromosome 3	54,100,447	1	54,096,407	54,100,447	21
Chromosome 4	61,163,185	1	61,154,091	61,163,185	47
Chromosome 5	59,223,585	1	59,218,002	59,223,585	28
Chromosome 6	65,096,967	1	65,091,153	65,096,967	51
Chromosome 7	57,352,724	1	57,344,913	57,352,724	38
Chromosome 8	57,938,902	1	57,932,463	57,938,902	37
Chromosome 9	52,180,088	1	52,176,488	52,180,088	27
unplaced	20,421,341	31	20,421,341	1,679,391	0

Assembly

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EL10_1.0

See Genome Information for Beta vulgaris

Pathogen Detection Resources

There are 235 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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