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ASM292280v2

Organism name:
Oryzias melastigma (Indian medaka)
Infraspecific name:
Strain: HK-1
Sex:
pooled male and female
BioSample:
SAMN07596545
BioProject:
PRJNA401159
Submitter:
Sungkyunkwan University
Date:
2020/04/13
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_002922805.2 (latest)
RefSeq assembly accession:
GCF_002922805.2 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
NVQA02
Assembly method:
platanus v. 1.2.4; Chromonomer v. 1.08
Expected final version:
yes
Reference guided assembly:
Om_v1.0.LG
Genome coverage:
82.0x
Sequencing technology:
Illumina HiSeq

IDs: 6720801 [UID] 18662548 [GenBank] 22295698 [RefSeq]

See Genome Information for Oryzias melastigma

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length778,703,520
Total ungapped length738,243,588
Gaps between scaffolds0
Number of scaffolds8,493
Scaffold N5029,987,720
Scaffold L5012
Number of contigs56,275
Contig N5030,057
Contig L506,936
Total number of chromosomes and plasmids25
Number of component sequences (WGS or clone)8,493

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_002922815.2)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Linkage Group LG1CM022579.1=NC_050512.10
Linkage Group LG2CM022580.1=NC_050513.10
Linkage Group LG3CM022581.1=NC_050514.10
Linkage Group LG4CM022582.1=NC_050515.10
Linkage Group LG5CM022583.1=NC_050516.10
Linkage Group LG6CM022584.1=NC_050517.10
Linkage Group LG7CM022585.1=NC_050518.10
Linkage Group LG8CM022586.1=NC_050519.10
Linkage Group LG9CM022587.1=NC_050520.10
Linkage Group LG10CM022588.1=NC_050521.10
Linkage Group LG11CM022589.1=NC_050522.10
Linkage Group LG12CM022590.1=NC_050523.10
Linkage Group LG13CM022591.1=NC_050524.10
Linkage Group LG14CM022592.1=NC_050525.10
Linkage Group LG15CM022593.1=NC_050526.10
Linkage Group LG16CM022594.1=NC_050527.10
Linkage Group LG17CM022595.1=NC_050528.10
Linkage Group LG18CM022596.1=NC_050529.10
Linkage Group LG19CM022597.1=NC_050530.10
Linkage Group LG20CM022598.1=NC_050531.10
Linkage Group LG21CM022599.1=NC_050532.10
Linkage Group LG22CM022600.1=NC_050533.10
Linkage Group LG23CM022601.1=NC_050534.10
Linkage Group LG24CM022602.1=NC_050535.10
unplacedn/an/an/a8,468

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All778,686,6568,492738,226,72429,987,72047,7820
Linkage Group LG132,650,375131,610,92032,650,3751,8440
Linkage Group LG222,233,504121,161,56522,233,5041,7880
Linkage Group LG335,273,651134,386,79435,273,6511,8900
Linkage Group LG431,690,522130,581,30331,690,5221,8180
Linkage Group LG537,217,997135,257,16237,217,9971,9360
Linkage Group LG635,156,557134,087,91835,156,5571,7560
Linkage Group LG733,184,612132,123,49333,184,6122,0070
Linkage Group LG825,075,644124,145,97625,075,6441,3990
Linkage Group LG933,865,906132,733,25033,865,9061,6600
Linkage Group LG1029,395,798128,626,15029,395,7981,4350
Linkage Group LG1127,366,141126,340,16427,366,1411,8180
Linkage Group LG1227,294,307126,405,22727,294,3071,5680
Linkage Group LG1333,845,631132,690,21233,845,6312,0320
Linkage Group LG1429,987,720128,993,62529,987,7201,4780
Linkage Group LG1531,267,959129,999,54731,267,9591,9880
Linkage Group LG1631,580,175130,527,16131,580,1752,1030
Linkage Group LG1734,596,080133,277,84934,596,0802,2650
Linkage Group LG1825,750,989124,598,64125,750,9891,3920
Linkage Group LG1924,828,326123,987,96024,828,3261,5350
Linkage Group LG2026,019,173125,013,01726,019,1731,8150
Linkage Group LG2128,918,509127,632,57628,918,5091,7800
Linkage Group LG2227,453,764126,624,25727,453,7641,4370
Linkage Group LG2323,211,787122,346,59623,211,7871,3250
Linkage Group LG2424,695,886123,849,44424,695,8861,2250
unplaced66,125,6438,46851,225,91731,3676,4880
MoleculeTotal
Length
Mitochondrion MT16,864